TkA01G335280 | RubberDandelionOmics

Gene overview

TkA01G335280

Reference: TK1151 Chr: Chr01 Coordinates: 83280679-83282593 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · TkA01G335280|TK1151|cDNA

AGCCATTGGTTTGCATTTCACCTTCTTCTTCGTCGATCCCACCAGTCGCCCGAGAGAACCCCACGAAATCGGAAGCAGGCAGCGAATCCACGAGCAGCACACACCGGGACTGAGGGCGACTCCGGCGAACCTGCATCGGGACCCGCTTGGCGATCCTGCCGGAGGAGACGACGACCGACGGCAGAGGTCGCGTCGAAGGGTCAAGATACGCCGGTTGCAGTTTATCTGCACCGCCTTTCTCAGTATATTATAGCTGTATT...

CDS

Download CDS FASTA

735 bp · TkA01G335280|TK1151|CDS

AGCCATTGGTTTGCATTTCACCTTCTTCTTCGTCGATCCCACCAGTCGCCCGAGAGAACCCCACGAAATCGGAAGCAGGCAGCGAATCCACGAGCAGCACACACCGGGACTGAGGGCGACTCCGGCGAACCTGCATCGGGACCCGCTTGGCGATCCTGCCGGAGGAGACGACGACCGACGGCAGAGGTCGCGTCGAAGGGTCAAGATACGCCGGTTGCAGTTTATCTGCACCGCCTTTCTCAGTATATTATAGCTGTATT...

Protein

Download Protein FASTA

244 aa · TkA01G335280|TK1151|PROTEIN

SHWFAFHLLLRRSHQSPERTPRNRKQAANPRAAHTGTEGDSGEPASGPAWRSCRRRRRPTAEVASKGQDTPVAVYLHRLSQYIIAVFLSLSLPFPAVRRILMPDLVSSFDFLLLPVSVSCCKIDRASDKGDRLCSCYTTLTMSFLRLHTISPGFKNANGGMKVPLYKYIADLSGRGNHVLPVPAFTLINGGKHAGNNLALRVIGRDNELMRKEAVKSRSGGYSIIFMVAVGILSFVVGYLIKQK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G335280`
TK1151 ID	TkA01G335280
OH-1004 ID	LXL04_003688
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.590 / OH-1004 92.748 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G335280

Location Chr01:83280679-83282593 (-)

Description Similar to enol-1: Enolase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29560`	Cytosolic enolase 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003688 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0000015 phosphopyruvate hydratase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004634 phosphopyruvate hydratase activity Molecular Function

KEGG gene cross-reference

cel:CELE_T21B10.2

gga:395689

rcu:8288376

sly:544068

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.383

Rank 1 · TkA01G335280 · TK1151

Cytoplasm0.241

Rank 2 · TkA01G335280 · TK1151

Cell membrane0.214

Rank 3 · TkA01G335280 · TK1151

Endoplasmic reticulum0.198

Rank 4 · TkA01G335280 · TK1151

Mitochondrion0.098

Rank 5 · TkA01G335280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00113Enolase_C178-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G335280	`PF00113`	Enolase_C	178	201	8.9e-05	22.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZW34`	Arabidopsis thaliana	sp\|Q9ZW34\|ENO3_ARATH Cytosolic enolase 3	61.900%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card