TkA01G325620 | RubberDandelionOmics

Gene overview

TkA01G325620

Reference: TK1151 Chr: Chr01 Coordinates: 81017559-81019517 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1271 bp · TkA01G325620|TK1151|cDNA

TCTCACTGTCTGTCCTAATCTTTCTGAGCTGAACTTTGAACAAATATCTTATCTGTCTCCCCAGCCCCTCTCCATGGACTTTCATCTTAAGCAATGGGCACACCAGAATCAACACCAACCTGATGATCCTTCAACGCTTGCTCTTCCTCTTTTTTCTTCGGAACCCACCTCTTCATCTTCACCAAAACCCTCAAGAGAGATGATGCAAGGGGTAAGTGGTTACTTCAGCGTAGGGCAATGGCAGGAACTTGAAGTACAGG...

CDS

Download CDS FASTA

1116 bp · TkA01G325620|TK1151|CDS

ATGGACTTTCATCTTAAGCAATGGGCACACCAGAATCAACACCAACCTGATGATCCTTCAACGCTTGCTCTTCCTCTTTTTTCTTCGGAACCCACCTCTTCATCTTCACCAAAACCCTCAAGAGAGATGATGCAAGGGGTAAGTGGTTACTTCAGCGTAGGGCAATGGCAGGAACTTGAAGTACAGGCATTGATATACAGATACATGCTCGCCGGTTCAACCATTCCTCCTCAACTTCTACACCTTTTGCTGAACTCCAA...

Protein

Download Protein FASTA

371 aa · TkA01G325620|TK1151|PROTEIN

MDFHLKQWAHQNQHQPDDPSTLALPLFSSEPTSSSSPKPSREMMQGVSGYFSVGQWQELEVQALIYRYMLAGSTIPPQLLHLLLNSNSNTNSPFYPLSNFPALCQTGGGYWGRGGMDPEPGRCRRTDGKKWRCSRDVVAGHKYCERHIHRGRNRSRKPVEIPTPTTAASSRVGDADYKKPSAYTNSATTATATTTTAAASVYGGAQTYPGTSHCGGSVSVHSPFFDQLHLNQRVSVSHGGISENDDKTSNGRILRPFFDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G325620`
TK1151 ID	TkA01G325620
OH-1004 ID	LXL04_003608
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G325620

Location Chr01:81017559-81019517 (-)

Description Similar to GRF4: Growth-regulating factor 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36400`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	No verified direct reference in this release
`At3g52910`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0204800`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os02g0678800`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os04g0574500`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009409 response to cold Biological Process

GO:0009624 response to nematode Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0032502 developmental process Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT2G36400

ath:AT3G52910

ath:AT4G37740

dosa:Os02g0678800

osa:107276671

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · TkA01G325620 · TK1151

Cytoplasm0.086

Rank 2 · TkA01G325620 · TK1151

Cell membrane0.028

Rank 3 · TkA01G325620 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA01G325620 · TK1151

Plastid0.013

Rank 5 · TkA01G325620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08880QLQ51-81 aa

PF16138DUF484668-99 aa

PF08879WRC118-160 aa

PF13891zf-C3HC3H_KANSL2132-152 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G325620	`PF08880`	QLQ	51	81	2.8e-09	37.2
TkA01G325620	`PF16138`	DUF4846	68	99	0.33	11.2
TkA01G325620	`PF08879`	WRC	118	160	9.7e-22	77.1
TkA01G325620	`PF13891`	zf-C3HC3H_KANSL2	132	152	0.17	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJR5`	Arabidopsis thaliana	sp\|Q9SJR5\|GRF3_ARATH Growth-regulating factor 3	43.100%	Swiss-Prot	Medium
`Q8L8A7`	Arabidopsis thaliana	sp\|Q8L8A7\|GRF4_ARATH Growth-regulating factor 4	39.100%	Swiss-Prot	Medium
`Q6AWY7`	Oryza sativa subsp. japonica	sp\|Q6AWY7\|GRF2_ORYSJ Growth-regulating factor 2	36.600%	Swiss-Prot	Medium
`Q6EPP9`	Oryza sativa subsp. japonica	sp\|Q6EPP9\|GRF10_ORYSJ Growth-regulating factor 10	56.400%	Swiss-Prot	Low
`Q6AWX7`	Oryza sativa subsp. japonica	sp\|Q6AWX7\|GRF12_ORYSJ Growth-regulating factor 12	60.700%	Swiss-Prot	Low

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