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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G321490
Reference: TK1151 Chr: Chr01 Coordinates: 79878745-79880920 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

552 bp · TkA01G321490|TK1151|cDNA

ATGGGGGCACTGATGTCGAAGATGTGGTTCATGCTTTTTCCGGCGAAGGAGTACAAGATCGTGGTGGTGGGGCTGGACAACGCCGGCAAAACGACGACGCTTTACAAGCTCCATTTGGGGGAGGTAGTTACCACGCATCCAACTGTTGGCAGCAACGTTGAGGAGATTGTCTACAAGAATATTCGATTTGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTGAGGACATCTTGGACAACTTATTATCGCGGGACACATGC...

CDS

Download CDS FASTA

552 bp · TkA01G321490|TK1151|CDS

ATGGGGGCACTGATGTCGAAGATGTGGTTCATGCTTTTTCCGGCGAAGGAGTACAAGATCGTGGTGGTGGGGCTGGACAACGCCGGCAAAACGACGACGCTTTACAAGCTCCATTTGGGGGAGGTAGTTACCACGCATCCAACTGTTGGCAGCAACGTTGAGGAGATTGTCTACAAGAATATTCGATTTGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTGAGGACATCTTGGACAACTTATTATCGCGGGACACATGC...

Protein

Download Protein FASTA

183 aa · TkA01G321490|TK1151|PROTEIN

MGALMSKMWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEIVYKNIRFEVWDLGGQDRLRTSWTTYYRGTHAVIVVIDSTDRARISIMKDELFKLLPNEDLQSAVVLVFANKQDLKEAMTPAEITDALSLHSIKNHDWHIQACCALTGEGLYDGMGWIAQRVTGKATS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G321490
TK1151 IDTkA01G321490
OH-1004 IDLXL04_020861
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)53.000
Protein coverage (%)TK1151 100.000 / OH-1004 97.861
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G321490
LocationChr01:79878745-79880920 (-)
DescriptionSimilar to ARF: ADP-ribosylation factor 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020861 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0003924 GTPase activity Molecular Function
GO:0003925 G protein activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT1G23490
ath:AT1G70490
dosa:Os01g0813400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.478
Rank 1 · TkA01G321490 · TK1151
Cytoplasm0.388
Rank 2 · TkA01G321490 · TK1151
Endoplasmic reticulum0.207
Rank 3 · TkA01G321490 · TK1151
Cell membrane0.158
Rank 4 · TkA01G321490 · TK1151
Lysosome / Vacuole0.128
Rank 5 · TkA01G321490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf11-176 aa
PF00503G-alpha16-38 aa
PF09439SRPRB18-143 aa
PF08477Roc19-129 aa
PF00071Ras19-142 aa
PF01926MMR_HSR119-123 aa
PF04670Gtr1_RagA19-141 aa
PF00009GTP_EFTU19-37 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G321490PF00025Arf111761.5e-67227.2
TkA01G321490PF00503G-alpha16381e-0525.6
TkA01G321490PF09439SRPRB181431.7e-1144.5
TkA01G321490PF08477Roc191294.1e-1453.6
TkA01G321490PF00071Ras191422.3e-1247.5
TkA01G321490PF01926MMR_HSR1191233.3e-0627.9
TkA01G321490PF04670Gtr1_RagA191411.6e-0525.2
TkA01G321490PF00009GTP_EFTU19370.000221.7
TkA01G321490PF02421FeoB_N19710.02215.0
TkA01G321490PF13401AAA_22201230.07814.0
TkA01G321490PF19993DO-GTPase220390.4410.9
TkA01G321490PF00503G-alpha47941e-0525.6
TkA01G321490PF00009GTP_EFTU481660.000221.7
TkA01G321490PF02421FeoB_N881290.02215.0
TkA01G321490PF19993DO-GTPase21041040.4410.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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