TkA01G319650 | RubberDandelionOmics

Gene overview

TkA01G319650

Reference: TK1151 Chr: Chr01 Coordinates: 79363430-79366098 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1655 bp · TkA01G319650|TK1151|cDNA

TTTGAGAAATGGATGTTAGATGATTACAAAATAGGATTTGGTCGAAAATATCAACACTAAAAACACAAGAGAGGAGAGATCTCTCCCCCTCGTGTTCTCTCTCTCGCCAATGTCGACACCAACCCTAATTCTGTCCCTCAATTTTCTTTCTCTTTGATCTTCCTCCCTCAAATCTATGCTGGATTCGTCTCAATCTATCTCCAATTCATTCATTTAGGTAGAAAGTATTGGGATTCCAGCTTTTCGTCATCTCCTTCTCT...

CDS

Download CDS FASTA

900 bp · TkA01G319650|TK1151|CDS

ATGTACAGGGACCGTGGTGGCTCGTCGTCGAGGTCGGATATGGTGGGAGGAGGTGGAACGGGGCCGTTAGATCGGAAAAGAATCAATGATGCGCTGGATAAGCACCTAGAGAAGACATCATCGCCTTCGACTTCTAGGGTTTTGAATATCAGCAACAAGGAGAAAGAGAAATTCTCCATGCCATCAACTTCCACGGCAGGTGGTGGCAAATCGTTCCACCAGGACAACCGTTCCTCCTCCACCATAGCCAACACCAAAAG...

Protein

Download Protein FASTA

299 aa · TkA01G319650|TK1151|PROTEIN

MYRDRGGSSSRSDMVGGGGTGPLDRKRINDALDKHLEKTSSPSTSRVLNISNKEKEKFSMPSTSTAGGGKSFHQDNRSSSTIANTKSKGSDEESETDSEESDVSGSDEDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYFDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMSAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G319650`
TK1151 ID	TkA01G319650
OH-1004 ID	LXL04_033562
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G319650

Location Chr01:79363430-79366098 (+)

Description Similar to CKB1: Casein kinase II subunit beta-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44680`	Plays a complex role in regulating the basal catalytic activity of the alpha subunit.	No verified direct reference in this release
`At5g47080`	Plays a complex role in regulating the basal catalytic activity of the alpha subunit.	Reconstitution of Arabidopsis casein kinase II from recombinant subunits and phosphorylation of transcription factor GBF1.1995 · DOI: 10.1105/tpc.7.1.105
`At3g60250`	Plays a complex role in regulating the basal catalytic activity of the alpha subunit.	Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.1998 · DOI: 10.1073/pnas.95.18.11020
`At4g17640`	Plays a complex role in regulating the basal catalytic activity of the alpha subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

GO:0042753 positive regulation of circadian rhythm Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005956 protein kinase CK2 complex Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G44680

ath:AT3G60250

ath:AT4G17640

ath:AT5G47080

dre:30428

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.775

Rank 1 · TkA01G319650 · TK1151

Cytoplasm0.319

Rank 2 · TkA01G319650 · TK1151

Mitochondrion0.036

Rank 3 · TkA01G319650 · TK1151

Cell membrane0.031

Rank 4 · TkA01G319650 · TK1151

Endoplasmic reticulum0.019

Rank 5 · TkA01G319650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09538FYDLN_acid41-112 aa

PF01214CK_II_beta112-295 aa

PF09538FYDLN_acid239-250 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G319650	`PF09538`	FYDLN_acid	41	112	3.5	9.1
TkA01G319650	`PF01214`	CK_II_beta	112	295	7.9e-76	254.6
TkA01G319650	`PF09538`	FYDLN_acid	239	250	3.5	9.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80507`	Arabidopsis thaliana	sp\|O80507\|CSK2E_ARATH Putative casein kinase II subunit beta-4	72.400%	Swiss-Prot	High
`P40228`	Arabidopsis thaliana	sp\|P40228\|CSK2B_ARATH Casein kinase II subunit beta-1	70.500%	Swiss-Prot	High
`O81275`	Arabidopsis thaliana	sp\|O81275\|CSK2D_ARATH Casein kinase II subunit beta-3	67.800%	Swiss-Prot	High
`P40229`	Arabidopsis thaliana	sp\|P40229\|CSK2C_ARATH Casein kinase II subunit beta-2	69.000%	Swiss-Prot	High

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