TkA01G229600 | RubberDandelionOmics

Gene overview

TkA01G229600

Reference: TK1151 Chr: Chr01 Coordinates: 58306291-58307353 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · TkA01G229600|TK1151|cDNA

ATGTATGATCCACATCAAAAACCACCAAAAGTACTTAGTTACCAAATGGACTGGAACGTAGGATTTGCCTATGCACGGAAAGGCCTGACAAAGGGGTCACTGGTTTTCAACAAGTCTGCTCTTTCTGTCAGTCCCTTCAAAGTTATGTTGCGAGTGGGAGAAGGAAACCAACATGAGATCTTGAGTTATTTTACTCCTGACACATACGCAAACAAAGATTCAGCAGTTGCAGCCAGGCTGGCAGCAGGGTTGTGTGCTGA...

CDS

Download CDS FASTA

480 bp · TkA01G229600|TK1151|CDS

ATGTATGATCCACATCAAAAACCACCAAAAGTACTTAGTTACCAAATGGACTGGAACGTAGGATTTGCCTATGCACGGAAAGGCCTGACAAAGGGGTCACTGGTTTTCAACAAGTCTGCTCTTTCTGTCAGTCCCTTCAAAGTTATGTTGCGAGTGGGAGAAGGAAACCAACATGAGATCTTGAGTTATTTTACTCCTGACACATACGCAAACAAAGATTCAGCAGTTGCAGCCAGGCTGGCAGCAGGGTTGTGTGCTGA...

Protein

Download Protein FASTA

159 aa · TkA01G229600|TK1151|PROTEIN

MYDPHQKPPKVLSYQMDWNVGFAYARKGLTKGSLVFNKSALSVSPFKVMLRVGEGNQHEILSYFTPDTYANKDSAVAARLAAGLCADLASAKYTGRAKNGFALVRPRGHHAGVKQAMGFCLHNNAAIAAFAAQAAGAKKVLILDWVMNVYTLFIFYIVY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G229600`
TK1151 ID	TkA01G229600
OH-1004 ID	LXL04_034025
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	86.600
Protein coverage (%)	TK1151 86.164 / OH-1004 15.754 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G229600

Location Chr01:58306291-58307353 (+)

Description Similar to CIPK24: CBL-interacting protein kinase 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18520`	Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).	PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.2013 · DOI: 10.1105/tpc.113.109710 MYB96 recruits the HDA15 protein to suppress negative regulators of ABA signaling in Arabidopsis.2019 · DOI: 10.1038/s41467-019-09417-1 HY5 Interacts with the Histone Deacetylase HDA15 to Repress Hypocotyl Cell Elongation in Photomorphogenesis.2019 · DOI: 10.1104/pp.19.00055 Arabidopsis histone deacetylase HDA15 directly represses plant response to elevated ambient temperature.2019 · DOI: 10.1111/tpj.14492

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034025 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009749 response to glucose Biological Process

GO:0010167 response to nitrate Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G24400

ath:AT5G35410

dosa:Os01g0536000

dosa:Os03g0319400

dosa:Os06g0606000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.431

Rank 1 · TkA01G229600 · TK1151

Nucleus0.264

Rank 2 · TkA01G229600 · TK1151

Mitochondrion0.134

Rank 3 · TkA01G229600 · TK1151

Peroxisome0.132

Rank 4 · TkA01G229600 · TK1151

Extracellular0.098

Rank 5 · TkA01G229600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00850Hist_deacetyl63-145 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G229600	`PF00850`	Hist_deacetyl	63	145	1.1e-20	74.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GXJ1`	Arabidopsis thaliana	sp\|Q8GXJ1\|HDA15_ARATH Histone deacetylase 15	79.100%	Swiss-Prot	Medium

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