TkA01G218430 | RubberDandelionOmics

Gene overview

TkA01G218430

Reference: TK1151 Chr: Chr01 Coordinates: 55676565-55678484 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

663 bp · TkA01G218430|TK1151|cDNA

ATGGTACTTAAGAAGACATTACAAACCATCTGCCTTCTGAATGTTCATCCCAATACAACAACTTCAATTGTCATCCAGGTTGTCAATGACGATGGTGCTCTTCTTCCTTGTGCAATAAATGCAGCTTGTGCTGCTCTCGTAGATGCTGGAACTCCTTTAAAGCATCTTGCAGAAATGAACCCTTTCACCTTGGTTGATGGAAAACCTTACCCTCTTGATATGAGAGGAGAGCTTGATGATACTGCTGCTTTCAAGAACTT...

CDS

Download CDS FASTA

663 bp · TkA01G218430|TK1151|CDS

ATGGTACTTAAGAAGACATTACAAACCATCTGCCTTCTGAATGTTCATCCCAATACAACAACTTCAATTGTCATCCAGGTTGTCAATGACGATGGTGCTCTTCTTCCTTGTGCAATAAATGCAGCTTGTGCTGCTCTCGTAGATGCTGGAACTCCTTTAAAGCATCTTGCAGAAATGAACCCTTTCACCTTGGTTGATGGAAAACCTTACCCTCTTGATATGAGAGGAGAGCTTGATGATACTGCTGCTTTCAAGAACTT...

Protein

Download Protein FASTA

220 aa · TkA01G218430|TK1151|PROTEIN

MVLKKTLQTICLLNVHPNTTTSIVIQVVNDDGALLPCAINAACAALVDAGTPLKHLAEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKNASLKFTVLNPKGRIWTMVAGGGASVIYADTCATADPDGQKRALVVGGGIANFTDVAATFNGIIRAMKEKEAKLKAANMHIYVRRGGPNYQRGLARMRALGDEIGIPVEVYGPEATMTGICKQAIDCITASA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G218430`
TK1151 ID	TkA01G218430
OH-1004 ID	LXL04_020056
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	85.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G218430

Location Chr01:55676565-55678484 (-)

Description Similar to ACLA-2: ATP-citrate synthase alpha chain protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g60810`	ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives.	No verified direct reference in this release
`At1g10670`	ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives.	Molecular characterization of a heteromeric ATP-citrate lyase that generates cytosolic acetyl-coenzyme A in Arabidopsis.2002 · DOI: 10.1104/pp.008110
`At1g09430`	ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0696200`	ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives.	No verified direct reference in this release
`Os12g0566300`	ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020056 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006085 acetyl-CoA biosynthetic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0015995 chlorophyll biosynthetic process Biological Process

GO:0016117 carotenoid biosynthetic process Biological Process

GO:0019252 starch biosynthetic process Biological Process

GO:0043481 anthocyanin accumulation in tissues in response to UV light Biological Process

GO:0045793 positive regulation of cell size Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0048366 leaf development Biological Process

KEGG gene cross-reference

ath:AT1G09430

ath:AT1G10670

ath:AT1G60810

dosa:Os12g0566300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.422

Rank 1 · TkA01G218430 · TK1151

Mitochondrion0.241

Rank 2 · TkA01G218430 · TK1151

Peroxisome0.167

Rank 3 · TkA01G218430 · TK1151

Nucleus0.141

Rank 4 · TkA01G218430 · TK1151

Extracellular0.126

Rank 5 · TkA01G218430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01138RNase_PH2-52 aa

PF16114Citrate_bind18-33 aa

PF24948Citrate_synth_N57-86 aa

PF16114Citrate_bind88-122 aa

PF16114Citrate_bind121-214 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G218430	`PF01138`	RNase_PH	2	52	2.3e-10	41.7
TkA01G218430	`PF16114`	Citrate_bind	18	33	9.2e-55	185.6
TkA01G218430	`PF24948`	Citrate_synth_N	57	86	4.4e-05	23.7
TkA01G218430	`PF16114`	Citrate_bind	88	122	9.2e-55	185.6
TkA01G218430	`PF16114`	Citrate_bind	121	214	9.2e-55	185.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22718`	Arabidopsis thaliana	sp\|O22718\|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2	64.600%	Swiss-Prot	High
`Q9SGY2`	Arabidopsis thaliana	sp\|Q9SGY2\|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1	64.200%	Swiss-Prot	High
`O80526`	Arabidopsis thaliana	sp\|O80526\|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3	62.600%	Swiss-Prot	High
`Q2QZ86`	Oryza sativa subsp. japonica	sp\|Q2QZ86\|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2	61.500%	Swiss-Prot	High
`Q2QNG7`	Oryza sativa subsp. japonica	sp\|Q2QNG7\|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3	61.900%	Swiss-Prot	High

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