TkA01G217450 | RubberDandelionOmics

Gene overview

TkA01G217450

Reference: TK1151 Chr: Chr01 Coordinates: 55415100-55417838 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

915 bp · TkA01G217450|TK1151|cDNA

AAAGTGAAAGAAAAGCCTGACAAGTATCACAAAGAGAAGCTGTTGGAATTCTGCGATCTGTTTGACATGCCAATTGCCAAACTTCCGCAAAGAAGGAAGATGTTGTTGTAAAGCTGATAGATTTCATGTTGACCCCTCATGCCACAACCAGTGAGCTCATTTCAGAGAAAGAACAGTCAAGCAAGGGTAAAAAGCGTACAGCAAGCAGCAAGAAAAGCACACCACCTTCAAAAAGCTCATCTAAGAAGCAGAAAACTAAA...

CDS

Download CDS FASTA

726 bp · TkA01G217450|TK1151|CDS

ATGTTGACCCCTCATGCCACAACCAGTGAGCTCATTTCAGAGAAAGAACAGTCAAGCAAGGGTAAAAAGCGTACAGCAAGCAGCAAGAAAAGCACACCACCTTCAAAAAGCTCATCTAAGAAGCAGAAAACTAAAAGCAATTCAGAAGAGGATGACAAGAAGAATTCAGACACAGACGAATCTGAAGATGAAGATGAGAAAGATGATGAAGAACATGAAAACACAAATGGCGATCCGGAAAAATCCGAAGACGAGAAATC...

Protein

Download Protein FASTA

241 aa · TkA01G217450|TK1151|PROTEIN

MLTPHATTSELISEKEQSSKGKKRTASSKKSTPPSKSSSKKQKTKSNSEEDDKKNSDTDESEDEDEKDDEEHENTNGDPEKSEDEKSEGTASEEEEEKEDASEPESEQENKKRKRSSSSKKRKSSSKKEAKSSSKKTTKTKTPAKSSTSGSKAKDETESGTKTFSRKKKKDAVEEKPVKKSTATKEKPAKKGTKEKEKPKSEKKITDDELRTAICEILKEVDFNTVRIRINYQLLLFNHEY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G217450`
TK1151 ID	TkA01G217450
OH-1004 ID	LXL04_015511
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 27.801 / OH-1004 10.518 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G217450

Location Chr01:55415100-55417838 (-)

Description Similar to ACS: Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36880`	Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation.	No verified direct reference in this release
`At5g55660`	Chromatin-associated protein which contributes to the modulation of chromatin structure (such as super-helical structure of DNA) and function (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015511 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006068 ethanol catabolic process Biological Process

GO:0006083 acetate metabolic process Biological Process

GO:0006085 acetyl-CoA biosynthetic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0006935 chemotaxis Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0019413 acetate biosynthetic process Biological Process

GO:0019427 acetyl-CoA biosynthetic process from acetate Biological Process

GO:0019542 propionate biosynthetic process Biological Process

GO:0045494 photoreceptor cell maintenance Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT5G36880

dme:Dmel_CG9390

hsa:55902

mmu:60525

plu:plu0074

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · TkA01G217450 · TK1151

Cytoplasm0.105

Rank 2 · TkA01G217450 · TK1151

Cell membrane0.017

Rank 3 · TkA01G217450 · TK1151

Extracellular0.016

Rank 4 · TkA01G217450 · TK1151

Mitochondrion0.013

Rank 5 · TkA01G217450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08766DEK_C206-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G217450	`PF08766`	DEK_C	206	226	0.0011	19.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DGD6`	Arabidopsis thaliana	sp\|B9DGD6\|ACS_ARATH Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal	78.600%	Swiss-Prot	High
`F4K4Y5`	Arabidopsis thaliana	sp\|F4K4Y5\|DEKP4_ARATH DEK domain-containing chromatin-associated protein 4	72.700%	Swiss-Prot	Low

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