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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G206660
Reference: TK1151 Chr: Chr01 Coordinates: 52608056-52616544 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5151 bp · TkA01G206660|TK1151|cDNA

AAAACCACACAAACGAAGCCAGTTAAAAAAAGGCGCAAAGAAAAACGTACCGAGTCTAGAGAAGAGAGTAATTATAAAATTGAGAATTTTTTAAAATAATTTCTGAAACACCCGCTTCCTTGCCGGAACCCCTGAACCCTACTACCACCACCAACCTCCATCACTCTTCGCCTGCGTTATCGACCTCAATCCATTGAAGTACACACGCATATGCTCGTGTAGTATCTTCTGTTGAATAATCTCTACCGGTGAAGAAATTT...

CDS

Download CDS FASTA

3951 bp · TkA01G206660|TK1151|CDS

ATGAGTACGGTAGACAAGATGTTGATAAAAGGTATCCGGAGTTTCGATCCGGAGAACCGAAACGTCATCACCTTCTACAAGCCGTTAACGCTCATCGTTGGTCCTAACGGTGCTGGCAAAACTACTATTATCGAGTGCTTAAAGCTATCCTGTACGGGTGAATTGCCACCGAATGCTAGGTCTGGTCAGAGTTTCATCCATGATCCCAAGGTTGCAGGGGAAACAGAAACAAAGGCCCAGATAAAGCTGCGGTTCAAGAC...

Protein

Download Protein FASTA

1316 aa · TkA01G206660|TK1151|PROTEIN

MSTVDKMLIKGIRSFDPENRNVITFYKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGQSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDSSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKLSQKDLEKLQILKDAAYKLRQSITQDHEESERLGSKMHDLELHLQDVDAKIRQTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G206660
TK1151 IDTkA01G206660
OH-1004 IDLXL04_004068
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G206660
LocationChr01:52608056-52616544 (-)
DescriptionSimilar to RAD50: DNA repair protein RAD50
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g31970 Component of the MRN complex, which plays a central role in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity and meiosis.
Disruption of the Arabidopsis RAD50 gene leads to plant sterility and MMS sensitivity.2001 · DOI: 10.1046/j.1365-313x.2001.00928.x
RAD50 function is essential for telomere maintenance in Arabidopsis.2001 · DOI: 10.1073/pnas.98.4.1711
Homologous recombination in planta is stimulated in the absence of Rad50.2001 · DOI: 10.1093/embo-reports/kve069
Meiotic defects in the Arabidopsis rad50 mutant point to conservation of the MRX complex function in early stages of meiotic recombination.2004 · DOI: 10.1007/s00412-004-0309-1

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004068 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000019 regulation of mitotic recombination Biological Process
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0000729 DNA double-strand break processing Biological Process
GO:0006281 DNA repair Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006312 mitotic recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
KEGG gene cross-reference
ath:AT2G31970
hsa:10111
rno:64012
xla:495064
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.877
Rank 1 · TkA01G206660 · TK1151
Cytoplasm0.182
Rank 2 · TkA01G206660 · TK1151
Mitochondrion0.026
Rank 3 · TkA01G206660 · TK1151
Cell membrane0.020
Rank 4 · TkA01G206660 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA01G206660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02463SMC_N4-96 aa
PF13476AAA_236-225 aa
PF13175AAA_1522-351 aa
PF13191AAA_1626-53 aa
PF13166AAA_1326-64 aa
PF13401AAA_2226-51 aa
PF13304AAA_2129-50 aa
PF13555AAA_2929-45 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G206660PF02463SMC_N4961.1e-0629.0
TkA01G206660PF13476AAA_2362257.9e-37128.6
TkA01G206660PF13175AAA_15223512.6e-0937.8
TkA01G206660PF13191AAA_1626530.03415.4
TkA01G206660PF13166AAA_1326640.3210.3
TkA01G206660PF13401AAA_2226510.3911.8
TkA01G206660PF13304AAA_2129501.1e-1042.7
TkA01G206660PF13555AAA_2929450.01415.8
TkA01G206660PF00005ABC_tran29480.02515.9
TkA01G206660PF00004AAA311440.02116.0
TkA01G206660PF13166AAA_131733630.3210.3
TkA01G206660PF13401AAA_221992200.3911.8
TkA01G206660PF13191AAA_162692690.03415.4
TkA01G206660PF13175AAA_152724662.6e-0937.8
TkA01G206660PF13304AAA_212733341.1e-1042.7
TkA01G206660PF04423Rad50_zn_hook3874112.2e-0524.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SL02Arabidopsis thalianasp|Q9SL02|RAD50_ARATH DNA repair protein RAD5060.500%Swiss-ProtHigh

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