TkA01G189760 | RubberDandelionOmics

Gene overview

TkA01G189760

Reference: TK1151 Chr: Chr01 Coordinates: 48618136-48619232 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

420 bp · TkA01G189760|TK1151|cDNA

ATGGACACAGTTTTCCGCAAATCCATATTCGGAAAAGGAATTGTTGATGGTGTTCCTGTTTTACTAGCAAAACCTCAGACATATATGAATTTGAGTGGTGAATGGAGTAGTCCACTTGCTGCCTATTACAAGCGGTGCTATCATTTGTTTCATAATTTCCATGATGATATGGATCTACCATGTGGGGTTCTTCACCTTCAGCCGAAGGGAGGCCATGGAACCATAATGGGAATGAAGAGTGTGATTTATCATTTCCGTGG...

CDS

Download CDS FASTA

420 bp · TkA01G189760|TK1151|CDS

ATGGACACAGTTTTCCGCAAATCCATATTCGGAAAAGGAATTGTTGATGGTGTTCCTGTTTTACTAGCAAAACCTCAGACATATATGAATTTGAGTGGTGAATGGAGTAGTCCACTTGCTGCCTATTACAAGCGGTGCTATCATTTGTTTCATAATTTCCATGATGATATGGATCTACCATGTGGGGTTCTTCACCTTCAGCCGAAGGGAGGCCATGGAACCATAATGGGAATGAAGAGTGTGATTTATCATTTCCGTGG...

Protein

Download Protein FASTA

139 aa · TkA01G189760|TK1151|PROTEIN

MDTVFRKSIFGKGIVDGVPVLLAKPQTYMNLSGEWSSPLAAYYKRCYHLFHNFHDDMDLPCGVLHLQPKGGHGTIMGMKSVIYHFRGNWRFARLRIGTGKPPGQMESKDLLLQKFNAIALLRIDVVLKEGVDALTKLKN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G189760`
TK1151 ID	TkA01G189760
OH-1004 ID	LXL04_004252
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	79.200
Protein coverage (%)	TK1151 89.928 / OH-1004 27.533 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G189760

Location Chr01:48618136-48619232 (+)

Description Similar to At5g19830: Peptidyl-tRNA hydrolase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19830`	The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.	No verified direct reference in this release
`At5g16140`	Required for the splicing of group IIB introns in chloroplasts.	No verified direct reference in this release
`At1g18440`	The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0132800`	Required for the splicing of group IIB introns in chloroplasts.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004252 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006397 mRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010214 seed coat development Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G13540

ath:AT5G16140

ath:AT5G19830

ath:AT5G38290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.254

Rank 1 · TkA01G189760 · TK1151

Cytoplasm0.196

Rank 2 · TkA01G189760 · TK1151

Plastid0.112

Rank 3 · TkA01G189760 · TK1151

Mitochondrion0.074

Rank 4 · TkA01G189760 · TK1151

Endoplasmic reticulum0.068

Rank 5 · TkA01G189760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01195Pept_tRNA_hydro7-136 aa

PF23939DUF727426-36 aa

PF23939DUF727475-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G189760	`PF01195`	Pept_tRNA_hydro	7	136	7.7e-30	104.8
TkA01G189760	`PF23939`	DUF7274	26	36	0.14	12.8
TkA01G189760	`PF23939`	DUF7274	75	95	0.14	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NLS8`	Arabidopsis thaliana	sp\|Q6NLS8\|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial	64.200%	Swiss-Prot	High
`Q9LF14`	Arabidopsis thaliana	sp\|Q9LF14\|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic	47.400%	Swiss-Prot	Medium
`Q8GW64`	Arabidopsis thaliana	sp\|Q8GW64\|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic	44.000%	Swiss-Prot	Medium
`Q5ZCL8`	Oryza sativa subsp. japonica	sp\|Q5ZCL8\|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic	46.700%	Swiss-Prot	Medium

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