TkA01G185460 | RubberDandelionOmics

Gene overview

TkA01G185460

Reference: TK1151 Chr: Chr01 Coordinates: 47594188-47597144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1979 bp · TkA01G185460|TK1151|cDNA

GAATCATGGCATATATGGAAAATTAGTTCCTTCTTGGTATTTTAGCGGGAATAATGCCAAACGGACATACAGCTACATCTTCTTCACCACCCAACAACAGATCTGAGTTTCTGACACACACTAGTACACCATCATCTTCACACACTAAAATGCCTAAACCGTCGCTGTCGTCGTCGTCTCCGCCATCTCAAACCCCCCTCAGAAACCCATTAATCAGACTCTTCTTCGTCTTCTTTGTCTGTTCAACTGCTTACATTCTT...

CDS

Download CDS FASTA

1905 bp · TkA01G185460|TK1151|CDS

ATGCCAAACGGACATACAGCTACATCTTCTTCACCACCCAACAACAGATCTGAGTTTCTGACACACACTAGTACACCATCATCTTCACACACTAAAATGCCTAAACCGTCGCTGTCGTCGTCGTCTCCGCCATCTCAAACCCCCCTCAGAAACCCATTAATCAGACTCTTCTTCGTCTTCTTTGTCTGTTCAACTGCTTACATTCTTGGCTCATTCAGATCCAACATTAACACCTTATATAAACCCACAACTAAAAATCA...

Protein

Download Protein FASTA

634 aa · TkA01G185460|TK1151|PROTEIN

MPNGHTATSSSPPNNRSEFLTHTSTPSSSHTKMPKPSLSSSSPPSQTPLRNPLIRLFFVFFVCSTAYILGSFRSNINTLYKPTTKNQQNCLNPVTIFTNFSHQNTPPPLDFETHNTLPPPRLNPPKKFKICPSNFTHYCPCQDPQRERLFKVERMLHRERHCPATDGEILRCLVPEPVGYKKPFPWPKSRAQAWFSNVPFKTLTESKKQQNWVRLVGDRLVFPGGGTSFQKGVKGYIDQLKKMVPLESGAIRTVLDTGCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G185460`
TK1151 ID	TkA01G185460
OH-1004 ID	LXL04_004200
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 97.003 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G185460

Location Chr01:47594188-47597144 (+)

Description Similar to At2g43200: Probable methyltransferase PMT19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43200`	Probable methyltransferase PMT19.	No verified direct reference in this release
`At2g45750`	Probable methyltransferase PMT16.	No verified direct reference in this release
`At4g10440`	Probable methyltransferase PMT17.	No verified direct reference in this release
`At1g33170`	Probable methyltransferase PMT18.	No verified direct reference in this release
`At4g00750`	Probable methyltransferase PMT15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004200 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G33170

ath:AT2G43200

ath:AT2G45750

ath:AT4G00750

ath:AT4G10440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.645

Rank 1 · TkA01G185460 · TK1151

Extracellular0.092

Rank 2 · TkA01G185460 · TK1151

Cell membrane0.089

Rank 3 · TkA01G185460 · TK1151

Endoplasmic reticulum0.075

Rank 4 · TkA01G185460 · TK1151

Nucleus0.041

Rank 5 · TkA01G185460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_29138-631 aa

PF13847Methyltransf_31253-353 aa

PF13649Methyltransf_25254-346 aa

PF08241Methyltransf_11255-349 aa

PF08242Methyltransf_12255-347 aa

PF05148Methyltransf_8307-350 aa

PF20922Anamorsin_N309-353 aa

PF08242Methyltransf_12550-590 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G185460	`PF03141`	Methyltransf_29	138	631	3.9e-202	673.1
TkA01G185460	`PF13847`	Methyltransf_31	253	353	7.9e-08	32.9
TkA01G185460	`PF13649`	Methyltransf_25	254	346	2.9e-09	38.2
TkA01G185460	`PF08241`	Methyltransf_11	255	349	7.4e-11	43.3
TkA01G185460	`PF08242`	Methyltransf_12	255	347	0.00013	23.4
TkA01G185460	`PF05148`	Methyltransf_8	307	350	0.0037	17.9
TkA01G185460	`PF20922`	Anamorsin_N	309	353	4.4e-05	24.0
TkA01G185460	`PF08242`	Methyltransf_12	550	590	0.00013	23.4
TkA01G185460	`PF13649`	Methyltransf_25	552	589	2.9e-09	38.2
TkA01G185460	`PF13847`	Methyltransf_31	553	603	7.9e-08	32.9
TkA01G185460	`PF08241`	Methyltransf_11	554	593	7.4e-11	43.3
TkA01G185460	`PF05148`	Methyltransf_8	564	616	0.0037	17.9
TkA01G185460	`PF20922`	Anamorsin_N	576	601	4.4e-05	24.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZW75`	Arabidopsis thaliana	sp\|Q9ZW75\|PMTJ_ARATH Probable methyltransferase PMT19	60.000%	Swiss-Prot	High
`O80844`	Arabidopsis thaliana	sp\|O80844\|PMTG_ARATH Probable methyltransferase PMT16	49.100%	Swiss-Prot	Medium
`Q9SZX8`	Arabidopsis thaliana	sp\|Q9SZX8\|PMTH_ARATH Probable methyltransferase PMT17	51.600%	Swiss-Prot	High
`Q9C884`	Arabidopsis thaliana	sp\|Q9C884\|PMTI_ARATH Probable methyltransferase PMT18	47.000%	Swiss-Prot	Medium
`Q9ZPH9`	Arabidopsis thaliana	sp\|Q9ZPH9\|PMTF_ARATH Probable methyltransferase PMT15	48.500%	Swiss-Prot	Medium

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