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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G182930
Reference: TK1151 Chr: Chr01 Coordinates: 46951800-46955723 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1983 bp · TkA01G182930|TK1151|cDNA

TACTTTTCTCCCTCACCCATTTTCCAATCATTATTAATCCATCAGAGAAAACCCTCCCGGAGCTACAAAATTCCCATTTCCACTTCCTTCCACCAAACACAAACCCCTCAATTTCACCAAAGAGAAAGAGGGGAAATCTGTTTGAGAAAAGGACATCCCAAGAACAACCCCACAAATAATTCAACAAATTCTCCACCAAAACAACTTTTGTCCAATTGTCCACTTCGGTTCTTGGGAGGATTCCAGATGGAAGAAGGGAG...

CDS

Download CDS FASTA

1452 bp · TkA01G182930|TK1151|CDS

TACTTTTCTCCCTCACCCATTTTCCAATCATTATTAATCCATCAGAGAAAACCCTCCCGGAGCTACAAAATTCCCATTTCCACTTCCTTCCACCAAACACAAACCCCTCAATTTCACCAAAGAGAAAGAGGGGAAATCTGTTTGAGAAAAGGACATCCCAAGAACAACCCCACAAATAATTCAACAAATTCTCCACCAAAACAACTTTTGTCCAATTGTCCACTTCGGTTCTTGGGAGGATTCCAGATGGAAGAAGGGAG...

Protein

Download Protein FASTA

483 aa · TkA01G182930|TK1151|PROTEIN

YFSPSPIFQSLLIHQRKPSRSYKIPISTSFHQTQTPQFHQRERGEICLRKGHPKNNPTNNSTNSPPKQLLSNCPLRFLGGFQMEEGSEPTTYWCHGCSRVVETFTEAEMIKCSLCQDGFVEEYDSARSDHHNHQHARDPESDRALSLWAPIFFGMMSDPRRRRRIRQIDNEENDENEDPEERYRRYHREGGESELDRELESIMRRRRRSSATIVQLLRTGIITQSENISDREGGENNRERDRDRERVIVVNPFNPTIIVQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G182930
TK1151 IDTkA01G182930
OH-1004 IDLXL04_004217
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.600
Protein coverage (%)TK1151 95.859 / OH-1004 92.415
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G182930
LocationChr01:46951800-46955723 (-)
DescriptionSimilar to SIRP1: E3 ubiquitin-protein ligase SIRP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19950 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. No verified direct reference in this release
At2g40830 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release
At3g46620 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131
The E3 ligase AtRDUF1 positively regulates salt stress responses in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pone.0071078

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0047484 regulation of response to osmotic stress Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0061635 regulation of protein complex stability Biological Process
GO:0071218 cellular response to misfolded protein Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system Biological Process
KEGG gene cross-reference
ath:AT1G26800
ath:AT3G19950
ath:AT3G56580
dosa:Os05g0488800
osa:4339152
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.569
Rank 1 · TkA01G182930 · TK1151
Nucleus0.454
Rank 2 · TkA01G182930 · TK1151
Cell membrane0.104
Rank 3 · TkA01G182930 · TK1151
Endoplasmic reticulum0.075
Rank 4 · TkA01G182930 · TK1151
Mitochondrion0.051
Rank 5 · TkA01G182930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01155HypA82-118 aa
PF14369Zn_ribbon_1990-123 aa
PF16685zf-RING_1092-117 aa
PF13920zf-C3HC4_393-116 aa
PF14634zf-RING_594-116 aa
PF05290Baculo_IE-199-122 aa
PF13771zf-HC5HC2H100-117 aa
PF29452FAR1_N104-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G182930PF01155HypA821180.4111.4
TkA01G182930PF14369Zn_ribbon_19901233.2e-0834.3
TkA01G182930PF16685zf-RING_10921174.38.2
TkA01G182930PF13920zf-C3HC4_3931160.1213.0
TkA01G182930PF14634zf-RING_5941160.04614.4
TkA01G182930PF05290Baculo_IE-1991220.6310.7
TkA01G182930PF13771zf-HC5HC2H1001170.1113.4
TkA01G182930PF29452FAR1_N1041170.9710.2
TkA01G182930PF23228zf_PCFS41081280.7110.3
TkA01G182930PF23217DUF70661101382.48.9
TkA01G182930PF13639zf-RING_21111349.7e-1452.1
TkA01G182930PF13923zf-C3HC4_21111331.9e-0834.7
TkA01G182930PF12678zf-rbx11111233.8e-0524.5
TkA01G182930PF17123zf-RING_111121217.2e-1039.1
TkA01G182930PF00097zf-C3HC41121151.2e-0629.0
TkA01G182930PF13445zf-RING_UBOX1121190.0008720.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPN7Arabidopsis thalianasp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like49.400%Swiss-ProtLow
O22197Arabidopsis thalianasp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A36.500%Swiss-ProtLow
Q9SNB6Arabidopsis thalianasp|Q9SNB6|RDUF1_ARATH E3 ubiquitin-protein ligase RDUF138.200%Swiss-ProtLow
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP137.700%Swiss-ProtMedium

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