TkA01G179590 | RubberDandelionOmics

Gene overview

TkA01G179590

Reference: TK1151 Chr: Chr01 Coordinates: 46005888-46015442 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7028 bp · TkA01G179590|TK1151|cDNA

CCAGTCTCCCCAATCTTTTACTCTTTCTTTCTCTCAAATTTCGCTAAAAAGCTCTCATTTTTTTTTCACTGTGTGTTTGAGTGTGAAACTGCGTGTAAATAGGAGCTCTAACAAATCGAAAAGGGGTTTCATACGGAAGAAGGATACTCCGAAACTTGCTGTTGCTGAAGTCGTCCATCGCTACATTCTTCAAAACCCTAACTTCCTGATATTGTTTACTGATTACATGATGGTGGTATCCAGCTGAAAAATTAAACTAA...

CDS

Download CDS FASTA

6345 bp · TkA01G179590|TK1151|CDS

ATGGAAGGGGATGACAGGGATGTAATGTTGGCATGCATAATTTCAGGGACCCTTTTCTCTTTCTTGGGGTTGGCTTCTTTTGCGATACTCTGGGCTGTTAATTGGAGACCATGGCGGATATACAGTTGGATCTTTGCTAGAAAATGGCCAAGTTTCCTTCAAGGTCCTCAACTTGGAATATTATGCGGTTTTTTATCCCTCTGTGCATGGCTGGCTGTCATTTCTCCAATTGTAGTTCTTATCACATGGGGATGTTGGTT...

Protein

Download Protein FASTA

2114 aa · TkA01G179590|TK1151|PROTEIN

MEGDDRDVMLACIISGTLFSFLGLASFAILWAVNWRPWRIYSWIFARKWPSFLQGPQLGILCGFLSLCAWLAVISPIVVLITWGCWLILILGRDIIGLAVIMAGTALLLAFYSIMLWWRTQWQSSRAVAVLLLLAVALLCAYELCAVYVTAGSTAPQRYSPSGFFFGVSAIALAINMLFICRMVFNGNGLDVDEYVRSAYKFAYSDCIEVGPVACLPEPPDPNDLYPRQSRRVSHLSLLYLGSLLVLLVYSILYGLTAKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G179590`
TK1151 ID	TkA01G179590
OH-1004 ID	LXL04_004234
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G179590

Location Chr01:46005888-46015442 (+)

Description Similar to DEK1: Calpain-type cysteine protease DEK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55350`	Essential protease involved in epiderm development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0709400`	Essential protease involved in epiderm development.	Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.1999 · DOI: 10.1242/dev.126.16.3629 The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice.2009 · DOI: 10.1016/j.ydbio.2009.07.042

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001558 regulation of cell growth Biological Process

GO:0001708 cell fate specification Biological Process

GO:0006508 proteolysis Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0040014 regulation of multicellular organism growth Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

GO:0090392 sepal giant cell differentiation Biological Process

GO:0090628 plant epidermal cell fate specification Biological Process

GO:0097264 self proteolysis Biological Process

GO:2000011 regulation of adaxial/abaxial pattern formation Biological Process

KEGG gene cross-reference

ath:AT1G55350

dosa:Os02g0709400

mmu:73647

osa:4330484

rno:116694

zma:542509

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.295

Rank 1 · TkA01G179590 · TK1151

Endoplasmic reticulum0.261

Rank 2 · TkA01G179590 · TK1151

Cell membrane0.251

Rank 3 · TkA01G179590 · TK1151

Cytoplasm0.170

Rank 4 · TkA01G179590 · TK1151

Nucleus0.116

Rank 5 · TkA01G179590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13385Laminin_G_31448-1510 aa

PF00648Peptidase_C21660-1958 aa

PF01067Calpain_III1969-2104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G179590	`PF13385`	Laminin_G_3	1448	1510	0.018	15.9
TkA01G179590	`PF00648`	Peptidase_C2	1660	1958	8e-88	295.0
TkA01G179590	`PF01067`	Calpain_III	1969	2104	8.2e-17	62.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RVL2`	Arabidopsis thaliana	sp\|Q8RVL2\|DEK1_ARATH Calpain-type cysteine protease DEK1	78.200%	Swiss-Prot	High
`Q6ZFZ4`	Oryza sativa subsp. japonica	sp\|Q6ZFZ4\|DEK1_ORYSJ Calpain-type cysteine protease ADL1	71.100%	Swiss-Prot	High

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