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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G174360
Reference: TK1151 Chr: Chr01 Coordinates: 44667610-44670724 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2179 bp · TkA01G174360|TK1151|cDNA

AACAAAAATCTAATATAGTTGTTACAAAAATTAATTACTCTAAAACAATAATATCCCAATTGAGGGTGAAATGAAAGTTTCACACTTTCTTGCCAACAAAATAAACACGGCTTCAGATGTAATTTCCAGTTGATCAAAATCAAAAATACTCTCTTCACACCAAACACCACTCTACACACACACACACACACATATCCATCTTTACATTTTCATGTAAAATCTGGAAAAAGTCATTTTCTGGTTCTCTCTTTCTGAAATAC...

CDS

Download CDS FASTA

1323 bp · TkA01G174360|TK1151|CDS

ATGGCTCAGTTATCTGAACGCCAAAGGTCTCCGAATGTACAGCAAAGGGGGTTTCGAGTTCATGCTCCATTGGTCGATTCGGTGTCATGTTACTGCAAAGTCGACGCGGGATTAAAAACGGTTGCCGGGGCCCGCAAATTCGTTCCCGGGTCAAAAATTTGCATCCAACCCGACATCAACCCACACGCCCATAAACCCAAAAATAGCCGTAAAGAACGGACCCGTATCCAACCACCCCTCCTCCCGGGCCTCCCTGATGA...

Protein

Download Protein FASTA

440 aa · TkA01G174360|TK1151|PROTEIN

MAQLSERQRSPNVQQRGFRVHAPLVDSVSCYCKVDAGLKTVAGARKFVPGSKICIQPDINPHAHKPKNSRKERTRIQPPLLPGLPDDLAIACLTRVPRAEHNKLRLVSKRFFRLLSSNYFYSLRKTLGMAEEWIFVFKRDRDGRISWHAFDPTYQIWQPLPPVPVDYENALGFGCAVLSGCHLYLFGGKDPLKGSMRRVVFYNARTNRWHKAPDMQRKRHFFGSCVINNCLYVAGGECDGVHRTLRSVEVYDPNKRRWSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G174360
TK1151 IDTkA01G174360
OH-1004 IDLXL04_004297
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G174360
LocationChr01:44667610-44670724 (-)
DescriptionSimilar to At1g55270: F-box/kelch-repeat protein At1g55270
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g55270 F-box/kelch-repeat protein At1g55270. No verified direct reference in this release
At1g27420 Putative F-box/kelch-repeat protein At1g27420. No verified direct reference in this release
At1g30090 F-box/kelch-repeat protein At1g30090. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004297 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006995 cellular response to nitrogen starvation Biological Process
GO:0009409 response to cold Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:2000762 regulation of phenylpropanoid metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G22040
ath:AT1G30090
ath:AT1G55270
ath:AT1G67480
ath:AT3G61350
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.656
Rank 1 · TkA01G174360 · TK1151
Cytoplasm0.247
Rank 2 · TkA01G174360 · TK1151
Cell membrane0.091
Rank 3 · TkA01G174360 · TK1151
Endoplasmic reticulum0.043
Rank 4 · TkA01G174360 · TK1151
Plastid0.041
Rank 5 · TkA01G174360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box82-122 aa
PF12937F-box-like83-121 aa
PF25210Kelch_FKB95131-162 aa
PF24681Kelch_KLHDC2_KLHL20_DRC7146-306 aa
PF13415Beta-prop_FBX42148-212 aa
PF01344Kelch_1149-163 aa
PF13964Beta-prop_Calicin155-270 aa
PF25210Kelch_FKB95173-354 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G174360PF00646F-box821221.9e-0525.1
TkA01G174360PF12937F-box-like831210.113.1
TkA01G174360PF25210Kelch_FKB951311621.3e-2178.2
TkA01G174360PF24681Kelch_KLHDC2_KLHL20_DRC71463063.9e-1246.7
TkA01G174360PF13415Beta-prop_FBX421482124.4e-0627.2
TkA01G174360PF01344Kelch_11491634.2e-2278.0
TkA01G174360PF13964Beta-prop_Calicin1552706.4e-1452.4
TkA01G174360PF25210Kelch_FKB951733541.3e-2178.2
TkA01G174360PF01344Kelch_11752164.2e-2278.0
TkA01G174360PF07646Kelch_21832151.3e-1041.4
TkA01G174360PF24981Beta-prop_ATRN-LZTR11832674e-0627.0
TkA01G174360PF01344Kelch_12192654.2e-2278.0
TkA01G174360PF13415Beta-prop_FBX422202844.4e-0627.2
TkA01G174360PF07646Kelch_22242641.3e-1041.4
TkA01G174360PF01344Kelch_12943084.2e-2278.0
TkA01G174360PF13964Beta-prop_Calicin2953526.4e-1452.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93W93Arabidopsis thalianasp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g5527072.700%Swiss-ProtHigh
Q9FZJ3Arabidopsis thalianasp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g2742024.200%Swiss-ProtLow
Q9C6Z0Arabidopsis thalianasp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g3009023.800%Swiss-ProtLow

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