TkA01G174090 | RubberDandelionOmics

Gene overview

TkA01G174090

Reference: TK1151 Chr: Chr01 Coordinates: 44555987-44556989 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

498 bp · TkA01G174090|TK1151|cDNA

ATGAGAGAATTCATAGGAATTTGTTTAACAGATGGGTCCCCTGTGAAGAGTCTTTCTGAGATTTCTGATGTGGGGTGTGCGAGAAAAGTCTGGCAGTGCCTAAGAGGCTTCGATGGAGCGAAAGATGTGACGACGGATTGTAAGACGCATAAAGTTGTAGTGAAGGGAGAAAAAGCAGATCCGTTGAAGGTTCTTGAAAGAGTCCAGAAAAAGAGTTATCGGCAAGTTGAGCTCCTTTCTCCGATACCAAAACCGTCTGC...

CDS

Download CDS FASTA

498 bp · TkA01G174090|TK1151|CDS

ATGAGAGAATTCATAGGAATTTGTTTAACAGATGGGTCCCCTGTGAAGAGTCTTTCTGAGATTTCTGATGTGGGGTGTGCGAGAAAAGTCTGGCAGTGCCTAAGAGGCTTCGATGGAGCGAAAGATGTGACGACGGATTGTAAGACGCATAAAGTTGTAGTGAAGGGAGAAAAAGCAGATCCGTTGAAGGTTCTTGAAAGAGTCCAGAAAAAGAGTTATCGGCAAGTTGAGCTCCTTTCTCCGATACCAAAACCGTCTGC...

Protein

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165 aa · TkA01G174090|TK1151|PROTEIN

MREFIGICLTDGSPVKSLSEISDVGCARKVWQCLRGFDGAKDVTTDCKTHKVVVKGEKADPLKVLERVQKKSYRQVELLSPIPKPSAEEPKVEEKESPKPEEKKVEVITVILKVNMHCEACAQEIRKRILRMKGMFFHFLFFKLIVFMNKIPFFHQLRMLHCVVV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G174090`
TK1151 ID	TkA01G174090
OH-1004 ID	LXL04_023688
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.600
Protein coverage (%)	TK1151 80.606 / OH-1004 25.279 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G174090

Location Chr01:44555987-44556989 (-)

Description Similar to P5CS2: Delta-1-pyrroline-5-carboxylate synthase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63530`	Heavy-metal-binding protein.	No verified direct reference in this release
`At2g28090`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g24580`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023688 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0055129 L-proline biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0004349 glutamate 5-kinase activity Molecular Function

GO:0004350 glutamate-5-semialdehyde dehydrogenase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

dosa:Os01g0848200

dosa:Os05g0455500

osa:4338979

sly:544281

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.491

Rank 1 · TkA01G174090 · TK1151

Nucleus0.346

Rank 2 · TkA01G174090 · TK1151

Cell membrane0.160

Rank 3 · TkA01G174090 · TK1151

Mitochondrion0.127

Rank 4 · TkA01G174090 · TK1151

Endoplasmic reticulum0.103

Rank 5 · TkA01G174090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403HMA20-73 aa

PF00403HMA112-134 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G174090	`PF00403`	HMA	20	73	2e-12	48.0
TkA01G174090	`PF00403`	HMA	112	134	2e-12	48.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5D3`	Arabidopsis thaliana	sp\|Q9C5D3\|HIP7_ARATH Heavy metal-associated isoprenylated plant protein 7	59.300%	Swiss-Prot	Medium
`Q9ZUV1`	Arabidopsis thaliana	sp\|Q9ZUV1\|HIP1_ARATH Heavy metal-associated isoprenylated plant protein 1	35.700%	Swiss-Prot	Medium
`Q9FLU5`	Arabidopsis thaliana	sp\|Q9FLU5\|HIP9_ARATH Heavy metal-associated isoprenylated plant protein 9	35.700%	Swiss-Prot	Medium

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