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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G167500
Reference: TK1151 Chr: Chr01 Coordinates: 42819315-42821400 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2008 bp · TkA01G167500|TK1151|cDNA

TTATTCGATTTCAAGGTACATATTTCCGTAATGAACTTTTGTCAAAGGTCAAGTTTCTTTATTGGTCATTTTGCAAAGTTCAAGTCTTGAATTTAAGATACCTACAATTTCAGGGTTTCTTTCATAAATAATACCCTTTTCTTCAAGATCGTCGACACCCCCAGCCAACATTTCATCCCTAGCTTGTAATCAGTAATCGCCCCTTTCAGATGTCTGCAAATTTCTCTAATGGGTCTCTTCATTTCCATTCGGTAACCACA...

CDS

Download CDS FASTA

1497 bp · TkA01G167500|TK1151|CDS

ATGTCTGCAAATTTCTCTAATGGGTCTCTTCATTTCCATTCGGTAACCACAACCCACATGAAATTTACTCACATTTCACCACTCAATTACAGATTCAGTCATCAATTTCCTCATAAGAAACCTACCAGATACACCGTTATCTGCAGTTCAAGTACTCGACCCAAGAGAAATTCGAAACCTGAAGAAAACGCAGAGGCTCTCGAATTAGTACGGACCCTCATGAAAAATTTCAACTACGACAAACCATTGGTGTCTACACT...

Protein

Download Protein FASTA

498 aa · TkA01G167500|TK1151|PROTEIN

MSANFSNGSLHFHSVTTTHMKFTHISPLNYRFSHQFPHKKPTRYTVICSSSTRPKRNSKPEENAEALELVRTLMKNFNYDKPLVSTLNKYVKLVRTEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYVADNGVYSKLISVMGKKGQTRLAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKSKALSKALGYFDKMKGTERCKPSIVTYNILLRASAQAKNITQVENLFQDLEESIATPDIFTFNGVMDAYGKNGMIIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G167500
TK1151 IDTkA01G167500
OH-1004 IDLXL04_032299
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)27.900
Protein coverage (%)TK1151 41.767 / OH-1004 43.515
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G167500
LocationChr01:42819315-42821400 (-)
DescriptionSimilar to EMB2750: Pentatricopeptide repeat-containing protein At3g06430, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g39620 Essential for embryo development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0750400 Involved in the biogenesis of the plastid translation machinery by promoting the splicing of group II introns in chloroplasts. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032299 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000373 Group II intron splicing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009555 pollen development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0048868 pollen tube development Biological Process
GO:0005730 nucleolus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003727 single-stranded RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G06430
ath:AT3G53170
ath:AT5G48730
zma:100126361
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.419
Rank 1 · TkA01G167500 · TK1151
Mitochondrion0.333
Rank 2 · TkA01G167500 · TK1151
Nucleus0.083
Rank 3 · TkA01G167500 · TK1151
Cytoplasm0.018
Rank 4 · TkA01G167500 · TK1151
Cell membrane0.009
Rank 5 · TkA01G167500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_33-27 aa
PF02758PYRIN59-78 aa
PF00637Clathrin63-112 aa
PF20431E_motif67-82 aa
PF29070MSC6_N83-109 aa
PF01535PPR88-108 aa
PF13041PPR_2103-125 aa
PF01535PPR106-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G167500PF13812PPR_33272.8e-36124.1
TkA01G167500PF02758PYRIN59780.02515.5
TkA01G167500PF00637Clathrin631120.06613.7
TkA01G167500PF20431E_motif67820.2312.4
TkA01G167500PF29070MSC6_N831091.6e-1867.7
TkA01G167500PF01535PPR881089.9e-41135.9
TkA01G167500PF13041PPR_21031257.5e-46154.7
TkA01G167500PF01535PPR1061209.9e-41135.9
TkA01G167500PF23276TPR_241172321.3e-1248.5
TkA01G167500PF13041PPR_21341777.5e-46154.7
TkA01G167500PF01535PPR1341639.9e-41135.9
TkA01G167500PF12854PPR_11341593.6e-29100.9
TkA01G167500PF13812PPR_31351762.8e-36124.1
TkA01G167500PF00637Clathrin1351980.06613.7
TkA01G167500PF17177PPR_long1432813.7e-1453.3
TkA01G167500PF06239ECSIT_N1441750.005316.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SV96Arabidopsis thalianasp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic72.400%Swiss-ProtHigh
A3ABE1Oryza sativa subsp. japonicasp|A3ABE1|PPR5_ORYSJ Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic76.500%Swiss-ProtHigh

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