TkA01G161200 | RubberDandelionOmics

Gene overview

TkA01G161200

Reference: TK1151 Chr: Chr01 Coordinates: 41213961-41215014 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

506 bp · TkA01G161200|TK1151|cDNA

TCCATCCCTCAGCGATCAGAAGTTAGAACACCCATCGTCTGTGTAAAGTGTAAACAGAGAATCAAATGAGGCCTCAAATAGTATTATTCGGGGATTCAATAACAGAACAATCCTTCAGATATGGTGGATATGGTGCTTCTCTAGCCGATACTTACTCTCGCAAGGCTGATATAGTGGTTCGAGGGTATGGCGGATACATTGTTGCATCACATTTTCCCCCTGGTAATTTATATCGATATACCCCCTCGGGTTCTACCACC...

CDS

Download CDS FASTA

441 bp · TkA01G161200|TK1151|CDS

ATGAGGCCTCAAATAGTATTATTCGGGGATTCAATAACAGAACAATCCTTCAGATATGGTGGATATGGTGCTTCTCTAGCCGATACTTACTCTCGCAAGGCTGATATAGTGGTTCGAGGGTATGGCGGATACATTGTTGCATCACATTTTCCCCCTGGTAATTTATATCGATATACCCCCTCGGGTTCTACCACCCCTCCGATTGCTACTACATTATTTTTTGGTGCAAATGATGCTGCACTTCCGGGAAGAACCAGTGA...

Protein

Download Protein FASTA

147 aa · TkA01G161200|TK1151|PROTEIN

MRPQIVLFGDSITEQSFRYGGYGASLADTYSRKADIVVRGYGGYIVASHFPPGNLYRYTPSGSTTPPIATTLFFGANDAALPGRTSERQYVPLEEYKENLRKIVHHLKECSPSMLIVLITPPPVDEEGRLEYAKSMYGEKAMKLPER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G161200`
TK1151 ID	TkA01G161200
OH-1004 ID	LXL04_031864
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	85.700
Protein coverage (%)	TK1151 100.000 / OH-1004 59.917 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G161200

Location Chr01:41213961-41215014 (-)

Description Similar to At5g62930: GDSL esterase/lipase At5g62930

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62930`	GDSL esterase/lipase At5g62930.	No verified direct reference in this release
`At5g45920`	GDSL esterase/lipase At5g45920.	No verified direct reference in this release
`At2g38180`	GDSL esterase/lipase At2g38180.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031864 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G38180

ath:AT3G11210

ath:AT5G45920

ath:AT5G62930

dosa:Os11g0708400

osa:4351232

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.540

Rank 1 · TkA01G161200 · TK1151

Nucleus0.284

Rank 2 · TkA01G161200 · TK1151

Peroxisome0.147

Rank 3 · TkA01G161200 · TK1151

Extracellular0.085

Rank 4 · TkA01G161200 · TK1151

Mitochondrion0.079

Rank 5 · TkA01G161200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03249TSA4-47 aa

PF00657Lipase_GDSL5-139 aa

PF13472Lipase_GDSL_27-130 aa

PF08885GSCFA76-124 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G161200	`PF03249`	TSA	4	47	0.078	12.4
TkA01G161200	`PF00657`	Lipase_GDSL	5	139	2.5e-13	51.4
TkA01G161200	`PF13472`	Lipase_GDSL_2	7	130	4.5e-12	47.6
TkA01G161200	`PF08885`	GSCFA	76	124	0.15	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FM04`	Arabidopsis thaliana	sp\|Q9FM04\|GDL88_ARATH GDSL esterase/lipase At5g62930	70.100%	Swiss-Prot	High
`Q6NMR9`	Arabidopsis thaliana	sp\|Q6NMR9\|GDL84_ARATH GDSL esterase/lipase At5g45920	53.200%	Swiss-Prot	High
`O80443`	Arabidopsis thaliana	sp\|O80443\|GDL46_ARATH GDSL esterase/lipase At2g38180	43.300%	Swiss-Prot	Medium

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