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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G156250
Reference: TK1151 Chr: Chr01 Coordinates: 39919924-39927937 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3183 bp · TkA01G156250|TK1151|cDNA

ATGATTTTTTCTACAGTAATTGGTGCAAATGCCGAAAATTCAAGATACGCTTCTGTTAGGGAATACTACGCCTATAAACTTCAAATACGTAGGCATGATAAATCTTACTTGTTACATTTTGGTAGACTACTACAACAATATATAGTTGATAATTACGTTAAATTAGAATCACAGAGATTAGATTTTTTTAGAAGCCAACAAAAAGAGATACGTCAAGAATTTCTTCAAGGAGTTGTAGATGCCATGGCAAATGGTGAAAC...

CDS

Download CDS FASTA

3183 bp · TkA01G156250|TK1151|CDS

ATGATTTTTTCTACAGTAATTGGTGCAAATGCCGAAAATTCAAGATACGCTTCTGTTAGGGAATACTACGCCTATAAACTTCAAATACGTAGGCATGATAAATCTTACTTGTTACATTTTGGTAGACTACTACAACAATATATAGTTGATAATTACGTTAAATTAGAATCACAGAGATTAGATTTTTTTAGAAGCCAACAAAAAGAGATACGTCAAGAATTTCTTCAAGGAGTTGTAGATGCCATGGCAAATGGTGAAAC...

Protein

Download Protein FASTA

1060 aa · TkA01G156250|TK1151|PROTEIN

MIFSTVIGANAENSRYASVREYYAYKLQIRRHDKSYLLHFGRLLQQYIVDNYVKLESQRLDFFRSQQKEIRQEFLQGVVDAMANGETQGSTIGRRIVLPADFIGGPRNMRRKYIDAMALVQKFGKPDIFLTLTCNPNWPEIKQHLMRHEEAHNRADLVVRVFHAKLEQFKHEILKRNVLGDVAAYTYVIEFQKRGLPHAYFLLILKPNSKMYHPTEYDGLVSAEIPDQNSNPHLFKMVKRHMFHGPCGSLKPDNICMKND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G156250
TK1151 IDTkA01G156250
OH-1004 IDLXL04_031338
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)73.400
Protein coverage (%)TK1151 99.340 / OH-1004 72.608
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G156250
LocationChr01:39919924-39927937 (-)
DescriptionSimilar to pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031338 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0031297 replication fork processing Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0043504 mitochondrial DNA repair Biological Process
GO:0071932 replication fork reversal Biological Process
GO:1902983 DNA strand elongation involved in mitotic DNA replication Biological Process
GO:1903469 removal of RNA primer involved in mitotic DNA replication Biological Process
GO:1990426 mitotic recombination-dependent replication fork processing Biological Process
KEGG gene cross-reference
hsa:80119
prw:PsycPRwf_1560
spo:2541213
xla:734585
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.898
Rank 1 · TkA01G156250 · TK1151
Cytoplasm0.140
Rank 2 · TkA01G156250 · TK1151
Mitochondrion0.045
Rank 3 · TkA01G156250 · TK1151
Cell membrane0.013
Rank 4 · TkA01G156250 · TK1151
Extracellular0.010
Rank 5 · TkA01G156250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14214Helitron_like_N22-203 aa
PF23343REP_ORF2-G2P128-215 aa
PF20199RepSA184-215 aa
PF23343REP_ORF2-G2P304-316 aa
PF10923BrxC_BrxD587-644 aa
PF04851ResIII591-642 aa
PF13086AAA_11592-650 aa
PF05970PIF1593-797 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G156250PF14214Helitron_like_N222031.7e-58198.7
TkA01G156250PF23343REP_ORF2-G2P1282150.002119.0
TkA01G156250PF20199RepSA1842150.3910.5
TkA01G156250PF23343REP_ORF2-G2P3043160.002119.0
TkA01G156250PF10923BrxC_BrxD5876440.2411.0
TkA01G156250PF04851ResIII5916420.00517.5
TkA01G156250PF13086AAA_115926500.07313.6
TkA01G156250PF05970PIF15937971.1e-71241.7
TkA01G156250PF13604AAA_305937441.8e-0525.3
TkA01G156250PF13191AAA_166016460.007617.5
TkA01G156250PF13245AAA_196147440.1413.0
TkA01G156250PF13401AAA_226146420.1613.0
TkA01G156250PF09848SLFN-g3_helicase6157930.03814.0
TkA01G156250PF01443Viral_helicase16187130.0003121.3
TkA01G156250PF21530Pif1_2B_dom8909327.7e-1451.9
TkA01G156250PF13538UvrD_C_298410230.0006320.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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