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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G147370
Reference: TK1151 Chr: Chr01 Coordinates: 37276046-37278061 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2016 bp · TkA01G147370|TK1151|cDNA

ATGATTATCTCGTATTTCAGATTCCTTCATTTTACTCATAAGCACCAGCCATGTCTCTTACTCACTTTCTCTTTCCACTCTCGATCTCTCCCGCCTCTAAAAGACGAATCCACCAACTGGAACACCTCTCACTCGTTCGTCCTCTCAAACCCACTATTATCGCTTTTAGAAAAATGCAAATCGATGACCCAAATGAAGCAAATCCAGACGCAAATGATCATAACGGGATTAATCTCAGATGGTTTAGCTGCAAGTCGATT...

CDS

Download CDS FASTA

2016 bp · TkA01G147370|TK1151|CDS

ATGATTATCTCGTATTTCAGATTCCTTCATTTTACTCATAAGCACCAGCCATGTCTCTTACTCACTTTCTCTTTCCACTCTCGATCTCTCCCGCCTCTAAAAGACGAATCCACCAACTGGAACACCTCTCACTCGTTCGTCCTCTCAAACCCACTATTATCGCTTTTAGAAAAATGCAAATCGATGACCCAAATGAAGCAAATCCAGACGCAAATGATCATAACGGGATTAATCTCAGATGGTTTAGCTGCAAGTCGATT...

Protein

Download Protein FASTA

671 aa · TkA01G147370|TK1151|PROTEIN

MIISYFRFLHFTHKHQPCLLLTFSFHSRSLPPLKDESTNWNTSHSFVLSNPLLSLLEKCKSMTQMKQIQTQMIITGLISDGLAASRLIAFCAISESRNLDYCTRILNNSQNLNVFSWNVTIKGYCESGKPKESLLLYRELLTRSKRLRPDNYTYPLLLRCCTNLPSIRMGLGVIGHVIHFGFDSDMYVNNSVIHFLLSCGELDHAHKVFDESFSRDLVSWNSIINGYVRNGKPWEALRLYGQMKEEGTKPDEVTMIGVIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G147370
TK1151 IDTkA01G147370
OH-1004 IDLXL04_004460
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.700
Protein coverage (%)TK1151 90.909 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G147370
LocationChr01:37276046-37278061 (+)
DescriptionSimilar to PCMP-E28: Pentatricopeptide repeat-containing protein At2g22410, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At2g29760 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At3g15930 Putative pentatricopeptide repeat-containing protein At3g15930. No verified direct reference in this release
At1g31430 Pentatricopeptide repeat-containing protein At1g31430. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004460 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G31430
ath:AT2G22410
ath:AT2G29760
ath:AT3G15930
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.632
Rank 1 · TkA01G147370 · TK1151
Plastid0.211
Rank 2 · TkA01G147370 · TK1151
Nucleus0.050
Rank 3 · TkA01G147370 · TK1151
Cytoplasm0.033
Rank 4 · TkA01G147370 · TK1151
Cell membrane0.006
Rank 5 · TkA01G147370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N41-84 aa
PF17177PPR_long62-114 aa
PF23276TPR_24104-139 aa
PF12854PPR_1112-138 aa
PF13041PPR_2113-162 aa
PF01535PPR115-142 aa
PF29070MSC6_N117-168 aa
PF23276TPR_24117-210 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G147370PF29070MSC6_N41844.1e-1659.8
TkA01G147370PF17177PPR_long621141.3e-0732.0
TkA01G147370PF23276TPR_241041393.2e-1350.5
TkA01G147370PF12854PPR_11121382.2e-42143.2
TkA01G147370PF13041PPR_21131621.9e-69230.3
TkA01G147370PF01535PPR1151429.5e-69223.7
TkA01G147370PF29070MSC6_N1171684.1e-1659.8
TkA01G147370PF23276TPR_241172103.2e-1350.5
TkA01G147370PF13428TPR_141241443.7e-0627.8
TkA01G147370PF13176TPR_71241440.0002521.6
TkA01G147370PF07719TPR_21241420.1113.4
TkA01G147370PF13374TPR_101241470.1812.6
TkA01G147370PF13812PPR_31441611.8e-2073.5
TkA01G147370PF12854PPR_11461542.2e-42143.2
TkA01G147370PF13812PPR_31812111.8e-2073.5
TkA01G147370PF13041PPR_21902111.9e-69230.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial58.200%Swiss-ProtHigh
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic34.500%Swiss-ProtMedium
O82380Arabidopsis thalianasp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic39.300%Swiss-ProtMedium
Q9LSB8Arabidopsis thalianasp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g1593039.500%Swiss-ProtMedium
Q9C866Arabidopsis thalianasp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g3143044.100%Swiss-ProtMedium

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