TkA01G142050 | RubberDandelionOmics

Gene overview

TkA01G142050

Reference: TK1151 Chr: Chr01 Coordinates: 36041469-36042604 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · TkA01G142050|TK1151|cDNA

ATGAACTTACTAGCTTGTTTGTTCAATGGTCTTCACAACCCAATAGTCTCCCTTTACGAACACCATTTCACCACCGGTAAGCTTCCTCTACTATCCCGATTCTTCAAATTCGAGATCTGTTGTTATATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAACAATGTCTTAAGGGCTATTCCTACAGAACTTAACCGAGACGAATGGATCTTAGTGTTACCTAGGGCTTTGGTGGC...

CDS

Download CDS FASTA

525 bp · TkA01G142050|TK1151|CDS

ATGAACTTACTAGCTTGTTTGTTCAATGGTCTTCACAACCCAATAGTCTCCCTTTACGAACACCATTTCACCACCGGTAAGCTTCCTCTACTATCCCGATTCTTCAAATTCGAGATCTGTTGTTATATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAACAATGTCTTAAGGGCTATTCCTACAGAACTTAACCGAGACGAATGGATCTTAGTGTTACCTAGGGCTTTGGTGGC...

Protein

Download Protein FASTA

174 aa · TkA01G142050|TK1151|PROTEIN

MNLLACLFNGLHNPIVSLYEHHFTTGKLPLLSRFFKFEICCYIFDGHNGSAAAIYTKENLLNNVLRAIPTELNRDEWILVLPRALVAGFVKTDKDFQEKVQSSGTTVTFVIVEGSVITVASVGDSRCILESADGGLYYLSADHRLECSEEERDRVIASGGEVGRLNAAGGVQVC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G142050`
TK1151 ID	TkA01G142050
OH-1004 ID	LXL04_004529
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G142050

Location Chr01:36041469-36042604 (-)

Description Similar to At1g47380: Probable protein phosphatase 2C 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47380`	Probable protein phosphatase 2C 12.	No verified direct reference in this release
`At1g68410`	Probable protein phosphatase 2C 15.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0567200`	Probable protein phosphatase 2C 15.	No verified direct reference in this release
`Os09g0459600`	Probable protein phosphatase 2C 69.	No verified direct reference in this release
`Os04g0449400`	Mediates the negative regulation of osmotic and salt stress tolerance through regulation of the jasmonate and abscisic acid signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004529 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G47380

ath:AT1G68410

dosa:Os02g0567200

dosa:Os04g0449400

dosa:Os09g0459600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.484

Rank 1 · TkA01G142050 · TK1151

Nucleus0.322

Rank 2 · TkA01G142050 · TK1151

Mitochondrion0.107

Rank 3 · TkA01G142050 · TK1151

Endoplasmic reticulum0.100

Rank 4 · TkA01G142050 · TK1151

Cell membrane0.091

Rank 5 · TkA01G142050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C43-164 aa

PF13672PP2C_246-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G142050	`PF00481`	PP2C	43	164	9.1e-16	59.0
TkA01G142050	`PF13672`	PP2C_2	46	148	0.00017	22.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FX08`	Arabidopsis thaliana	sp\|Q9FX08\|P2C12_ARATH Probable protein phosphatase 2C 12	80.900%	Swiss-Prot	High
`Q9M9C6`	Arabidopsis thaliana	sp\|Q9M9C6\|P2C15_ARATH Probable protein phosphatase 2C 15	64.100%	Swiss-Prot	High
`Q6YTI2`	Oryza sativa subsp. japonica	sp\|Q6YTI2\|P2C15_ORYSJ Probable protein phosphatase 2C 15	68.700%	Swiss-Prot	High
`Q67J17`	Oryza sativa subsp. japonica	sp\|Q67J17\|P2C69_ORYSJ Probable protein phosphatase 2C 69	67.900%	Swiss-Prot	High
`Q7XTC7`	Oryza sativa subsp. japonica	sp\|Q7XTC7\|P2C40_ORYSJ Probable protein phosphatase 2C 40	66.400%	Swiss-Prot	High

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