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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G131780
Reference: TK1151 Chr: Chr01 Coordinates: 33336194-33336781 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

588 bp · TkA01G131780|TK1151|cDNA

ATGGAGCAGCATCAGTCTGAACATGGCGACGAGCACCTCCGCCTCTTCCCCTTTGATCCTTATCAACACCATCATTCTTCTCTCATCAACATGAACTTCCTTTCCTACCGCCGGAGTTTACTACAAGATGAAGAGACCTCCAGAGCTATCGGATCGCCGACGCCATCCTTCACCACCAACTCACCTTTCGACTCTTCACTAGCCCTCACGATCCTCGTCCTTCTCACCGTTCTCTTCTTCATGGCCTTCTTCTCTCTCTA...

CDS

Download CDS FASTA

588 bp · TkA01G131780|TK1151|CDS

ATGGAGCAGCATCAGTCTGAACATGGCGACGAGCACCTCCGCCTCTTCCCCTTTGATCCTTATCAACACCATCATTCTTCTCTCATCAACATGAACTTCCTTTCCTACCGCCGGAGTTTACTACAAGATGAAGAGACCTCCAGAGCTATCGGATCGCCGACGCCATCCTTCACCACCAACTCACCTTTCGACTCTTCACTAGCCCTCACGATCCTCGTCCTTCTCACCGTTCTCTTCTTCATGGCCTTCTTCTCTCTCTA...

Protein

Download Protein FASTA

195 aa · TkA01G131780|TK1151|PROTEIN

MEQHQSEHGDEHLRLFPFDPYQHHHSSLINMNFLSYRRSLLQDEETSRAIGSPTPSFTTNSPFDSSLALTILVLLTVLFFMAFFSLYIRRFSSVSNSDDSLSGRRRSAPHLRRDKHGGLDASTVRSLPVVPYSADSKIWGECSICLSEFQERETVKVIPYCNHGFHPLCIDTWLSSHVSCPLCRSTELFPAGDEA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G131780
TK1151 IDTkA01G131780
OH-1004 IDLXL04_004595
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G131780
LocationChr01:33336194-33336781 (+)
DescriptionSimilar to ATL57: RING-H2 finger protein ATL57
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27940 RING-H2 finger protein ATL57. No verified direct reference in this release
At1g72200 RING-H2 finger protein ATL11. No verified direct reference in this release
At3g05200 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At4g40070 RING-H2 finger protein ATL32. No verified direct reference in this release
At5g27420 E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition.
CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings.2009 · DOI: 10.1111/j.1365-313x.2009.04006.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004595 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0033591 response to L-ascorbic acid Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G22500
ath:AT1G72200
ath:AT2G27940
ath:AT3G05200
ath:AT4G40070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.303
Rank 1 · TkA01G131780 · TK1151
Cell membrane0.269
Rank 2 · TkA01G131780 · TK1151
Lysosome / Vacuole0.233
Rank 3 · TkA01G131780 · TK1151
Nucleus0.195
Rank 4 · TkA01G131780 · TK1151
Cytoplasm0.163
Rank 5 · TkA01G131780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12678zf-rbx1138-184 aa
PF13639zf-RING_2141-184 aa
PF17123zf-RING_11141-170 aa
PF13923zf-C3HC4_2141-183 aa
PF14634zf-RING_5141-184 aa
PF13920zf-C3HC4_3141-185 aa
PF29721TMEM129_C141-163 aa
PF11793FANCL_C141-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G131780PF12678zf-rbx11381846.6e-0936.6
TkA01G131780PF13639zf-RING_21411842.9e-1350.6
TkA01G131780PF17123zf-RING_111411704.8e-1039.7
TkA01G131780PF13923zf-C3HC4_21411839.1e-0832.5
TkA01G131780PF14634zf-RING_51411840.001419.3
TkA01G131780PF13920zf-C3HC4_31411850.01316.0
TkA01G131780PF29721TMEM129_C1411630.2112.7
TkA01G131780PF11793FANCL_C1411770.611.2
TkA01G131780PF17120zf-RING_161411811.98.9
TkA01G131780PF00097zf-C3HC41421836.2e-0729.9
TkA01G131780PF13445zf-RING_UBOX1421810.001419.3
TkA01G131780PF14447Prok-RING_41421850.1712.5
TkA01G131780PF23412zf_RING_Vps81421720.6710.6
TkA01G131780PF24921RING_XB3-XBAT311421851.69.5
TkA01G131780PF12861zf-ANAPC111561860.0005920.5
TkA01G131780PF23413zf_RING_Vps8_fungal1601720.06613.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJJ7Arabidopsis thalianasp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL5746.900%Swiss-ProtMedium
Q84W40Arabidopsis thalianasp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL1141.500%Swiss-ProtMedium
Q8RXX9Arabidopsis thalianasp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL640.100%Swiss-ProtMedium
Q8W571Arabidopsis thalianasp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL3246.600%Swiss-ProtMedium
Q8LGA5Arabidopsis thalianasp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL3139.700%Swiss-ProtMedium

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