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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G130660
Reference: TK1151 Chr: Chr01 Coordinates: 32996729-33009793 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3346 bp · TkA01G130660|TK1151|cDNA

AAAAAATTGTCAATCCCCAACAAGGATGTAGGGGAAAGGGCTCGGTTTATTTCAAAGATTCTCCTCTTCCTGACACTCCAAACTCGCAACCCTCCAAACACAAACGATCCTGATCTGGTCCACAACGAGCAAACACAATCACCCACCTCCTGCGAACATAAACCGAACCCCGCACTCACACTCAATCAATTACCCTCTCAATCTCTCTCTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACAGCTC...

CDS

Download CDS FASTA

2832 bp · TkA01G130660|TK1151|CDS

ATGTCTCCGAAGCCATCAGAGAACGGAACGGAAGGCGACGACGAGAGAGAAGAAGACGAGGAAGATACAGAAGAGGACAAGGAGGAAGAAGAAGAGGAGGAGGAAGATGAGCCGAGGCTTAAGTACCAGCGAATGGGAGGCAACGTGCCTTCTCTTCTATCGAGTGACGCCGCTTCTTGTGTCGCGGTTGCCGAACGGATGATCGCTCTTGGTACTCATGGTGGTACCGTTCATATCCTGGATTTTCTTGGGAACCAGGT...

Protein

Download Protein FASTA

943 aa · TkA01G130660|TK1151|PROTEIN

MSPKPSENGTEGDDEREEDEEDTEEDKEEEEEEEEDEPRLKYQRMGGNVPSLLSSDAASCVAVAERMIALGTHGGTVHILDFLGNQVKEFRAHTAAVNDLCFDLDGEFIGSCSDDGSVVIISLFTDEKQKFEYHRPMKAIAIDPDYARKESRRFVTGGLAGNLYFNTKKWLGYRDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRVTFIERPRGSPRPELLLPHLVWQDDALLVIGWGTAIKIASIKTNQAR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G130660
TK1151 IDTkA01G130660
OH-1004 IDLXL04_004610
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G130660
LocationChr01:32996729-33009793 (-)
DescriptionSimilar to VPS41: Vacuolar protein sorting-associated protein 41 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08190 Required for vacuolar assembly and vacuolar traffic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004610 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006623 protein targeting to vacuole Biological Process
GO:0007034 vacuolar transport Biological Process
GO:0008333 endosome to lysosome transport Biological Process
GO:0009267 cellular response to starvation Biological Process
GO:0009630 gravitropism Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0016236 macroautophagy Biological Process
GO:0034058 endosomal vesicle fusion Biological Process
GO:0035542 regulation of SNARE complex assembly Biological Process
GO:0045055 regulated exocytosis Biological Process
GO:0048193 Golgi vesicle transport Biological Process
GO:0061909 autophagosome-lysosome fusion Biological Process
KEGG gene cross-reference
ath:AT1G08190
dre:563215
hsa:27072
mmu:218035
sly:544040
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.486
Rank 1 · TkA01G130660 · TK1151
Nucleus0.321
Rank 2 · TkA01G130660 · TK1151
Lysosome / Vacuole0.164
Rank 3 · TkA01G130660 · TK1151
Golgi apparatus0.152
Rank 4 · TkA01G130660 · TK1151
Cell membrane0.130
Rank 5 · TkA01G130660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15713PTPRCAP10-49 aa
PF23411Beta-prop_Vps4140-396 aa
PF23752Beta-prop_WDR11_2nd49-100 aa
PF23341PEP5_VPS11_N52-100 aa
PF23098Beta-prop_NOL10_N54-86 aa
PF24807WD40_CDC20-Fz56-144 aa
PF25172Beta-prop_WDR3_2nd57-127 aa
PF23414Beta-prop_EML_258-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G130660PF15713PTPRCAP10494.68.4
TkA01G130660PF23411Beta-prop_Vps41403963.8e-97326.3
TkA01G130660PF23752Beta-prop_WDR11_2nd491000.05312.8
TkA01G130660PF23341PEP5_VPS11_N521000.0912.6
TkA01G130660PF23098Beta-prop_NOL10_N54860.2311.2
TkA01G130660PF24807WD40_CDC20-Fz561441.3e-0525.4
TkA01G130660PF25172Beta-prop_WDR3_2nd571270.0004820.2
TkA01G130660PF23414Beta-prop_EML_2581290.0008319.5
TkA01G130660PF24805EIF3I581440.00915.9
TkA01G130660PF23410Beta-prop_VPS8581210.2311.2
TkA01G130660PF24817WD40_WDHD1_1st591273.3e-0937.1
TkA01G130660PF23756Beta-prop_HPS5591302.9e-0524.2
TkA01G130660PF25173Beta-prop_WDR3_1st601285.9e-0730.1
TkA01G130660PF13570Beta-prop_ACSF4621360.03314.3
TkA01G130660PF25174Beta-prop_THOC3641456.2e-0626.1
TkA01G130660PF24796WDR55641270.0001122.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93043Arabidopsis thalianasp|P93043|VPS41_ARATH Vacuolar protein sorting-associated protein 41 homolog72.500%Swiss-ProtHigh

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