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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G113220
Reference: TK1151 Chr: Chr01 Coordinates: 28750938-28751564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

567 bp · TkA01G113220|TK1151|cDNA

ATGACACCTGAATCCGAGAACAACGAAGAGCCAACCGGAAACACAGACAGCACCCAGGAACACGTTATTCTGATCAATCCTTTCAACCGGTCTATCATTGTCCATGGCGGCAACCTCTCGCCCAACAACCCGTTTGGATCTTTCGGCGATTATTTCATCGGGCCTGGTTTAGAGCAACTTTTACAGCATCTATCCGAAAACGACCCGAACAAATACGGAACCCCACCCGCCCAGAAAGAAGCAATCGAGGCCATGCCAAA...

CDS

Download CDS FASTA

567 bp · TkA01G113220|TK1151|CDS

ATGACACCTGAATCCGAGAACAACGAAGAGCCAACCGGAAACACAGACAGCACCCAGGAACACGTTATTCTGATCAATCCTTTCAACCGGTCTATCATTGTCCATGGCGGCAACCTCTCGCCCAACAACCCGTTTGGATCTTTCGGCGATTATTTCATCGGGCCTGGTTTAGAGCAACTTTTACAGCATCTATCCGAAAACGACCCGAACAAATACGGAACCCCACCCGCCCAGAAAGAAGCAATCGAGGCCATGCCAAA...

Protein

Download Protein FASTA

188 aa · TkA01G113220|TK1151|PROTEIN

MTPESENNEEPTGNTDSTQEHVILINPFNRSIIVHGGNLSPNNPFGSFGDYFIGPGLEQLLQHLSENDPNKYGTPPAQKEAIEAMPKVKIEQDSIQCSVCLEEFEIGNEAREMPCKHMFHGDCILPWLELHSSCPVCRYQMTADESKIDQEREGSGGESGNRNSEERRFFVSLPWPLSLLSSPRANTK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G113220
TK1151 IDTkA01G113220
OH-1004 IDLXL04_026490
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)87.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G113220
LocationChr01:28750938-28751564 (+)
DescriptionSimilar to RING1: E3 ubiquitin-protein ligase RING1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19950 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. No verified direct reference in this release
At3g56580 E3 ubiquitin-protein ligase that promotes osmotic stress and abscisic acid (ABA) responses.
The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis.2013 · DOI: 10.1016/j.plantsci.2012.12.007
PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.2017 · DOI: 10.1093/jxb/erx069
At2g40830 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026490 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0061635 regulation of protein complex stability Biological Process
GO:0071218 cellular response to misfolded protein Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system Biological Process
GO:0090378 seed trichome elongation Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G26800
ath:AT2G40830
ath:AT3G19950
dosa:Os05g0488800
osa:4339152
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.700
Rank 1 · TkA01G113220 · TK1151
Nucleus0.455
Rank 2 · TkA01G113220 · TK1151
Endoplasmic reticulum0.072
Rank 3 · TkA01G113220 · TK1151
Cell membrane0.058
Rank 4 · TkA01G113220 · TK1151
Mitochondrion0.049
Rank 5 · TkA01G113220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24921RING_XB3-XBAT3117-34 aa
PF13771zf-HC5HC2H77-125 aa
PF11789zf-Nse89-137 aa
PF12678zf-rbx190-138 aa
PF21257PHD_ash2p_like94-105 aa
PF12861zf-ANAPC1195-105 aa
PF13920zf-C3HC4_395-141 aa
PF13639zf-RING_296-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G113220PF24921RING_XB3-XBAT3117340.5711.0
TkA01G113220PF13771zf-HC5HC2H771250.03215.2
TkA01G113220PF11789zf-Nse891370.1412.7
TkA01G113220PF12678zf-rbx1901381.8e-0628.8
TkA01G113220PF21257PHD_ash2p_like941050.7110.6
TkA01G113220PF12861zf-ANAPC11951057.4e-0523.4
TkA01G113220PF13920zf-C3HC4_3951410.001718.9
TkA01G113220PF13639zf-RING_2961384.5e-1556.4
TkA01G113220PF17123zf-RING_11961249.5e-1141.9
TkA01G113220PF13923zf-C3HC4_2961373.8e-1040.1
TkA01G113220PF14634zf-RING_5961380.0008220.0
TkA01G113220PF29452FAR1_N961440.04614.4
TkA01G113220PF16685zf-RING_10961400.1113.3
TkA01G113220PF24441DUF7560961130.1812.2
TkA01G113220PF00097zf-C3HC4971372.4e-0731.2
TkA01G113220PF13445zf-RING_UBOX971276.4e-0626.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPN7Arabidopsis thalianasp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like52.700%Swiss-ProtHigh
Q94AK4Arabidopsis thalianasp|Q94AK4|RZF1_ARATH E3 ubiquitin-protein ligase RZF143.300%Swiss-ProtMedium
O22197Arabidopsis thalianasp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A46.500%Swiss-ProtMedium
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP142.400%Swiss-ProtMedium

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