TkA01G112820 | RubberDandelionOmics

Gene overview

TkA01G112820

Reference: TK1151 Chr: Chr01 Coordinates: 28640601-28641756 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1047 bp · TkA01G112820|TK1151|cDNA

CACAAAATAAAAAGAAAAAGAAAGATAAAAGCTTTTACTTTGCAGCAATTTCTCCCCATAAATAACATTCTAGCTCCAATTTTTGCTATTATTATTCTCACTCAACTATTCTCTTTTCAAAACCCAAAAGTTCTTAACTTTTTATGGATATCTGCCAGACTATGTCCGTTTCCGGCGGACTTCCGACCAACTATCCGCCTGAGAAACATCTTTGCACCCTTGACGACCTTCTTTCCGGTCATTCCATGGAAGAAGACGAT...

CDS

Download CDS FASTA

732 bp · TkA01G112820|TK1151|CDS

ATGGATATCTGCCAGACTATGTCCGTTTCCGGCGGACTTCCGACCAACTATCCGCCTGAGAAACATCTTTGCACCCTTGACGACCTTCTTTCCGGTCATTCCATGGAAGAAGACGATGTTAACATGGAATGGCTGTCGATTTTTGTGGAGGATTGTTTATCTAGCAGCGGGAATTGCATGCCACCAGCCGCAAAGCCCCAGAGTACAACTTCCACTGCAGAAGGTACAACTACAACTACAACTACAAACACGTCAACGGA...

Protein

Download Protein FASTA

243 aa · TkA01G112820|TK1151|PROTEIN

MDICQTMSVSGGLPTNYPPEKHLCTLDDLLSGHSMEEDDVNMEWLSIFVEDCLSSSGNCMPPAAKPQSTTSTAEGTTTTTTTNTSTEPKVKDTQSTHKLLVPCKARSKRKRSRTCWSQKYRTTLEQPCWLAESELVILPRKCTSPNSSRGSGQEEGSSGQGQGRRCTHCLSQRTPQWRAGPQGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVNHKHSNSHRKVLEMRMSILPSSSANSSSSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G112820`
TK1151 ID	TkA01G112820
OH-1004 ID	LXL04_004770
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G112820

Location Chr01:28640601-28641756 (+)

Description Similar to GATA9: GATA transcription factor 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g32890`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At5g25830`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At3g60530`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At5g66320`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At2g45050`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004770 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0071555 cell wall organization Biological Process

GO:1905177 tracheary element differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G45050

ath:AT4G32890

ath:AT4G36240

ath:AT5G25830

ath:AT5G66320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.922

Rank 1 · TkA01G112820 · TK1151

Cytoplasm0.200

Rank 2 · TkA01G112820 · TK1151

Mitochondrion0.030

Rank 3 · TkA01G112820 · TK1151

Cell membrane0.028

Rank 4 · TkA01G112820 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA01G112820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04629ICA6919-70 aa

PF05086Dicty_REP58-115 aa

PF21827New_glue67-109 aa

PF00320GATA76-80 aa

PF13842zf-Tnp_294-121 aa

PF13842zf-Tnp_2158-195 aa

PF00320GATA166-200 aa

PF21827New_glue234-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G112820	`PF04629`	ICA69	19	70	0.035	15.0
TkA01G112820	`PF05086`	Dicty_REP	58	115	0.14	10.9
TkA01G112820	`PF21827`	New_glue	67	109	2.4	8.7
TkA01G112820	`PF00320`	GATA	76	80	1.9e-14	53.7
TkA01G112820	`PF13842`	zf-Tnp_2	94	121	0.22	12.8
TkA01G112820	`PF13842`	zf-Tnp_2	158	195	0.22	12.8
TkA01G112820	`PF00320`	GATA	166	200	1.9e-14	53.7
TkA01G112820	`PF21827`	New_glue	234	241	2.4	8.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82632`	Arabidopsis thaliana	sp\|O82632\|GATA9_ARATH GATA transcription factor 9	40.500%	Swiss-Prot	Medium
`P69781`	Arabidopsis thaliana	sp\|P69781\|GAT12_ARATH GATA transcription factor 12	40.200%	Swiss-Prot	Medium
`O49743`	Arabidopsis thaliana	sp\|O49743\|GATA4_ARATH GATA transcription factor 4	81.500%	Swiss-Prot	Low
`Q9FH57`	Arabidopsis thaliana	sp\|Q9FH57\|GATA5_ARATH GATA transcription factor 5	41.500%	Swiss-Prot	Medium
`O49741`	Arabidopsis thaliana	sp\|O49741\|GATA2_ARATH GATA transcription factor 2	80.000%	Swiss-Prot	Low

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