TkA01G102450 | RubberDandelionOmics

Gene overview

TkA01G102450

Reference: TK1151 Chr: Chr01 Coordinates: 25966132-25967091 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

583 bp · TkA01G102450|TK1151|cDNA

TTCAAAGATTTTCACAATCTCGAAAATACACAGAAATTTGAATGCGAAATCGGTTAGTCTTTTACCTTATTTCATTTACTTTTTACATTGTAATTATGGCTCCCATAGGAGCTGCACAGTCAGCAGCAAAGGAGCTTCTTGATTCCATTCTAGATGCCATTGTTCGGATATTCGATAACCATGCGGTGGTTGGAGAGCTTCTTGAAGCGAAATCTTCTCAGCATGCAGCTATGAACACACCAAAATCTATGGTGGCTACA...

CDS

Download CDS FASTA

372 bp · TkA01G102450|TK1151|CDS

ATGCGAAATCGGTTAGTCTTTTACCTTATTTCATTTACTTTTTACATTGTAATTATGGCTCCCATAGGAGCTGCACAGTCAGCAGCAAAGGAGCTTCTTGATTCCATTCTAGATGCCATTGTTCGGATATTCGATAACCATGCGGTGGTTGGAGAGCTTCTTGAAGCGAAATCTTCTCAGCATGCAGCTATGAACACACCAAAATCTATGGTGGCTACATTATCTGGGATCCCTGATTCTGAAGCATCTAAGGATACAGG...

Protein

Download Protein FASTA

123 aa · TkA01G102450|TK1151|PROTEIN

MRNRLVFYLISFTFYIVIMAPIGAAQSAAKELLDSILDAIVRIFDNHAVVGELLEAKSSQHAAMNTPKSMVATLSGIPDSEASKDTGGYTISFSMTVLQSECQQLICEILRATPEAASADAAV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G102450`
TK1151 ID	TkA01G102450
OH-1004 ID	LXL04_021364
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G102450

Location Chr01:25966132-25967091 (-)

Description Similar to SEC8: Exocyst complex component SEC8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10380`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021364 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006887 exocytosis Biological Process

GO:0006893 Golgi to plasma membrane transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0060321 acceptance of pollen Biological Process

GO:0090522 vesicle tethering involved in exocytosis Biological Process

GO:0000145 exocyst Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009524 phragmoplast Cellular Component

KEGG gene cross-reference

ath:AT3G10380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.426

Rank 1 · TkA01G102450 · TK1151

Cytoplasm0.151

Rank 2 · TkA01G102450 · TK1151

Mitochondrion0.138

Rank 3 · TkA01G102450 · TK1151

Extracellular0.116

Rank 4 · TkA01G102450 · TK1151

Nucleus0.101

Rank 5 · TkA01G102450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29484DDB_G0285495_M26-76 aa

PF23857Phage_TAC_1927-85 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G102450	`PF29484`	DDB_G0285495_M	26	76	0.054	14.7
TkA01G102450	`PF23857`	Phage_TAC_19	27	85	0.047	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YU5`	Arabidopsis thaliana	sp\|Q93YU5\|SEC8_ARATH Exocyst complex component SEC8	72.400%	Swiss-Prot	High

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