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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G098140
Reference: TK1151 Chr: Chr01 Coordinates: 24787599-24790819 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2484 bp · TkA01G098140|TK1151|cDNA

GATAACGATGAGTTGGTAGTTATCTTAAAGTCTAAGGGCTGAAGATAACTTATGTAAGAATTGCGAAACCTTTAAATAGACGGGGGCAAAACTAAATCTTGTGGAAATACAGTAGCGACATTCACCGGAATTTCAAACGATGCCACCGCACATTCTTCCCGTCTCCGGCAGCTATGTCATTCCTATAAACCCTAATCTCACCTACTATCCTCCACACCTGTTATGATCTCATATTTACTTTTCTCTCAAGAAATTTAACC...

CDS

Download CDS FASTA

1920 bp · TkA01G098140|TK1151|CDS

ATGAACACCGTCTTCGAAGATGATGAAAAGGATCCAGAAATGGGTTCAGATTCAGGCACGAATCCATTTCTCCAAAGATCTCCCTCTCCTTCCCCTTCCCAAAGGTCAATCGACTCGTTCCCTGCTCCTTCCCCAAGAACACCTTCATTAGTGGTATCCAACTCCGGTAGGTTATCATATTCATCATACACCGGAAAACCGGGCACAACTCCAAGTTTTGGGAACATGTACGGATCAAATTCAAGCAAGTCGCTATCATA...

Protein

Download Protein FASTA

639 aa · TkA01G098140|TK1151|PROTEIN

MNTVFEDDEKDPEMGSDSGTNPFLQRSPSPSPSQRSIDSFPAPSPRTPSLVVSNSGRLSYSSYTGKPGTTPSFGNMYGSNSSKSLSYSSSSNTWGFSSSGKSLSGKSLMSQSGGKKKYVKQVTGKHKDTELHLAAKRGDVMAVKLIIDEINEQMLRTMTGVDFDAEVAEIRASVVNEVNELGETALFTAAERGCVEVVKELLPYTTKQGLCLKNRSGFDPLHIAAREGHQEIVQILLDHDPDLSKTVGHSNSTPLTSAAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G098140
TK1151 IDTkA01G098140
OH-1004 IDLXL04_004907
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G098140
LocationChr01:24787599-24790819 (-)
DescriptionSimilar to ITN1: Ankyrin repeat-containing protein ITN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12360 Involved in salt stress tolerance.
ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
At2g01680 Ankyrin repeat-containing protein At2g01680. No verified direct reference in this release
At5g02620 Ankyrin repeat-containing protein At5g02620. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0837000 Involved in salt stress tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004907 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0038180 nerve growth factor signaling pathway Biological Process
GO:1990090 cellular response to nerve growth factor stimulus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005770 late endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0019887 protein kinase regulator activity Molecular Function
KEGG gene cross-reference
ath:AT2G01680
ath:AT3G12360
ath:AT5G02620
dosa:Os01g0837000
rno:116478
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.828
Rank 1 · TkA01G098140 · TK1151
Cytoplasm0.099
Rank 2 · TkA01G098140 · TK1151
Nucleus0.074
Rank 3 · TkA01G098140 · TK1151
Endoplasmic reticulum0.067
Rank 4 · TkA01G098140 · TK1151
Lysosome / Vacuole0.031
Rank 5 · TkA01G098140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06048DUF92792-160 aa
PF03030H_PPase114-140 aa
PF24521Ank_KRIT1126-149 aa
PF23432DUF7118127-176 aa
PF00023Ank128-147 aa
PF13857Ank_5129-147 aa
PF12796Ank_2131-244 aa
PF13637Ank_4131-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G098140PF06048DUF927921600.01815.4
TkA01G098140PF03030H_PPase1141407.2e-0522.4
TkA01G098140PF24521Ank_KRIT11261492.2e-1454.1
TkA01G098140PF23432DUF71181271760.1511.9
TkA01G098140PF00023Ank1281473.4e-38128.2
TkA01G098140PF13857Ank_51291476.1e-32110.1
TkA01G098140PF12796Ank_21312447.7e-56187.4
TkA01G098140PF13637Ank_41311997.2e-31106.3
TkA01G098140PF13606Ank_31311482.3e-2689.4
TkA01G098140PF13857Ank_51792036.1e-32110.1
TkA01G098140PF00023Ank1822023.4e-38128.2
TkA01G098140PF13606Ank_31822032.3e-2689.4
TkA01G098140PF24521Ank_KRIT11832742.2e-1454.1
TkA01G098140PF13637Ank_41862377.2e-31106.3
TkA01G098140PF12796Ank_22132747.7e-56187.4
TkA01G098140PF13857Ank_52132556.1e-32110.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7A2Arabidopsis thalianasp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN173.000%Swiss-ProtHigh
Q9ZU96Arabidopsis thalianasp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g0168043.200%Swiss-ProtLow
Q6AWW5Arabidopsis thalianasp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g0262054.700%Swiss-ProtHigh
A2CIR5Oryza sativa subsp. japonicasp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR453.300%Swiss-ProtHigh

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