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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G090310
Reference: TK1151 Chr: Chr01 Coordinates: 22931122-22931457 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

336 bp · TkA01G090310|TK1151|cDNA

AATCCCGCCTCCTCCAATTCCATTAGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGACGACAGACATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCCCTCAAATCAGCCTCCGATTTCAGGTAAGCATTCTCACACACACAAATTAGTTGATTTGTTACACATAGAGCTCATTCTCCC...

CDS

Download CDS FASTA

336 bp · TkA01G090310|TK1151|CDS

AATCCCGCCTCCTCCAATTCCATTAGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGACGACAGACATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCCCTCAAATCAGCCTCCGATTTCAGGTAAGCATTCTCACACACACAAATTAGTTGATTTGTTACACATAGAGCTCATTCTCCC...

Protein

Download Protein FASTA

111 aa · TkA01G090310|TK1151|PROTEIN

NPASSNSISDSTSRPQLSLAAFLFSSVTQRLLRPQRHIRRQTYPVSGRSYLLVGHRAPAPSNQPPISGKHSHTHKLVDLLHIELILPQISFRPLFSSDFSSCSLKSVEVSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G090310
TK1151 IDTkA01G090310
OH-1004 IDLXL04_031866
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)41.000
Protein coverage (%)TK1151 71.171 / OH-1004 35.117
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G090310
LocationChr01:22931122-22931457 (-)
DescriptionSimilar to VIL2: VIN3-like protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031866 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009409 response to cold Biological Process
GO:0009908 flower development Biological Process
GO:0010048 vernalization response Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
GO:0048572 short-day photoperiodism Biological Process
GO:0048575 short-day photoperiodism, flowering Biological Process
GO:0048587 regulation of short-day photoperiodism, flowering Biological Process
KEGG gene cross-reference
ath:AT2G18880
ath:AT3G24440
ath:AT4G30200
ath:AT5G57380
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.598
Rank 1 · TkA01G090310 · TK1151
Cytoplasm0.361
Rank 2 · TkA01G090310 · TK1151
Cell membrane0.087
Rank 3 · TkA01G090310 · TK1151
Endoplasmic reticulum0.072
Rank 4 · TkA01G090310 · TK1151
Mitochondrion0.045
Rank 5 · TkA01G090310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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