TkA01G074560 | RubberDandelionOmics

Gene overview

TkA01G074560

Reference: TK1151 Chr: Chr01 Coordinates: 19107118-19108408 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1059 bp · TkA01G074560|TK1151|cDNA

TATAAATCCGACTCAAGTGATTGTGTTTTAAGTCGTAACAAAAGCTTCCAGATTTAGCGATTTACTACAATGGCGAAGATCGCGATCGGCTCAATTAAGGAGGTGATCAGTCCCGACTGCATCCAAGCGCTCGTTGTCGAGTTCATCGTCACGTTTCTTTTCATCTTTGCCGGTGTCGGATCCGCCATGACCACCGAAAAGCTGGTGGGAAATGAGGTGGTGGGGCTGTTTTTCGTGGCAATGGCTCACGCATTTGTGGT...

CDS

Download CDS FASTA

747 bp · TkA01G074560|TK1151|CDS

ATGGCGAAGATCGCGATCGGCTCAATTAAGGAGGTGATCAGTCCCGACTGCATCCAAGCGCTCGTTGTCGAGTTCATCGTCACGTTTCTTTTCATCTTTGCCGGTGTCGGATCCGCCATGACCACCGAAAAGCTGGTGGGAAATGAGGTGGTGGGGCTGTTTTTCGTGGCAATGGCTCACGCATTTGTGGTGGCGGTGATGATATCGGCTGGTTTTAGAATCTCCGGCGGTCATCTGAATCCGGCAGTCACTCTCGGCCT...

Protein

Download Protein FASTA

248 aa · TkA01G074560|TK1151|PROTEIN

MAKIAIGSIKEVISPDCIQALVVEFIVTFLFIFAGVGSAMTTEKLVGNEVVGLFFVAMAHAFVVAVMISAGFRISGGHLNPAVTLGLCVGGHITVVRSVLYWIDQLLASVAACALLSYLSGGLATPVHTLAAGMDSLQGVIMEIVLTFSLLFTVYATIVDPKKGFLDGLGPLLTGLVVGANIMAAGAFSGASMNPARSFGPALVAGDWTDHWVYWVSPLIGGGHAGFVYENFFIVRTHVPLARHDEGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G074560`
TK1151 ID	TkA01G074560
OH-1004 ID	LXL04_005233
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G074560

Location Chr01:19107118-19108408 (+)

Description Similar to TIP4-1: Aquaporin TIP4-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25810`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release
`At3g16240`	Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0232000`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005233 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0015840 urea transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000326 protein storage vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT2G25810

ath:AT3G16240

dosa:Os05g0231700

nta:107817944

zma:542647

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.439

Rank 1 · TkA01G074560 · TK1151

Cell membrane0.262

Rank 2 · TkA01G074560 · TK1151

Endoplasmic reticulum0.194

Rank 3 · TkA01G074560 · TK1151

Cytoplasm0.105

Rank 4 · TkA01G074560 · TK1151

Golgi apparatus0.074

Rank 5 · TkA01G074560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230MIP14-229 aa

PF11240DUF3042137-162 aa

PF11240DUF3042173-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G074560	`PF00230`	MIP	14	229	3.5e-67	227.1
TkA01G074560	`PF11240`	DUF3042	137	162	0.91	10.1
TkA01G074560	`PF11240`	DUF3042	173	190	0.91	10.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82316`	Arabidopsis thaliana	sp\|O82316\|TIP41_ARATH Aquaporin TIP4-1	74.800%	Swiss-Prot	High
`Q41951`	Arabidopsis thaliana	sp\|Q41951\|TIP21_ARATH Aquaporin TIP2-1	57.000%	Swiss-Prot	High
`Q9LWR2`	Oryza sativa subsp. japonica	sp\|Q9LWR2\|TIP43_ORYSJ Probable aquaporin TIP4-3	59.900%	Swiss-Prot	High

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