TkA01G073780 | RubberDandelionOmics

Gene overview

TkA01G073780

Reference: TK1151 Chr: Chr01 Coordinates: 18945051-18948967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2013 bp · TkA01G073780|TK1151|cDNA

ATTTGGTTCATTTATTGCCCTACTTAGCGGCACAATTTAATGTTTAAAATAATAAAGTCAAAAGTTCACAAAACAAAAGTGGGAGGACCATTTTGAAACTTCTACAAATACCTAAAAGTATTATAAGTTTATAACGGTTCGAGTAATCATTTCCCAATCAAGCCAAAATACTATATTCTCCTCTGCTTCTTCCTTCTGCTACACTTCAGGCATAAAAGTTTAGGCAACCTATCAATCGCTCGGCCATGGCAGCAGCTCTC...

CDS

Download CDS FASTA

909 bp · TkA01G073780|TK1151|CDS

ATGAAACAAATGAAATCAAGCAAACATTTTGTTACAAAAAAAGCAAAAGAAGCACATCTTTTCTACATCCCTTTTAGCTCCCGAATGTTGGAAGAAAAATTATATGTTGTTGACTCTCACAGTCACAAGAACTTGATTCAGTACTTGAAGAATTATCTTGATTTAATTTCTGGAAAATATAATTTCTGGAATAGAACCGGTGGATATGATCATTTCCTTGTTGCCTGTCATGATTGGGCTCCATCAGAAACAAAAAAATA...

Protein

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302 aa · TkA01G073780|TK1151|PROTEIN

MKQMKSSKHFVTKKAKEAHLFYIPFSSRMLEEKLYVVDSHSHKNLIQYLKNYLDLISGKYNFWNRTGGYDHFLVACHDWAPSETKKYMNNCIRALCNSDIKSEGFQLGKDVSLPETIIQTSKNPSKQSFGGQPSSKRSTLAFFAGRMHGNLRQILLHHWENKDPQIKIFKKLPKSKNNKNYIQFMKSSKYCICAKGYEVNSPRVVEAISYGCVPVIISDNFVPPFFEVLDWESFAVFLKEKDVPNLKRILVGISDERYLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G073780`
TK1151 ID	TkA01G073780
OH-1004 ID	LXL04_005238
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 56.874 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G073780

Location Chr01:18945051-18948967 (-)

Description Similar to At5g03795: Probable glycosyltransferase At5g03795

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g33290`	Involved in pectin biosynthesis.	Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.050906
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005238 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010398 xylogalacturonan metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0035252 UDP-xylosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G03795

ath:AT5G11130

ath:AT5G25310

ath:AT5G33290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.436

Rank 1 · TkA01G073780 · TK1151

Endoplasmic reticulum0.140

Rank 2 · TkA01G073780 · TK1151

Extracellular0.117

Rank 3 · TkA01G073780 · TK1151

Nucleus0.072

Rank 4 · TkA01G073780 · TK1151

Cell membrane0.065

Rank 5 · TkA01G073780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT472-250 aa

PF00534Glycos_transf_130-51 aa

PF24785RXYLT1_C73-100 aa

PF24785RXYLT1_C174-220 aa

PF00534Glycos_transf_1174-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G073780	`PF03016`	Exostosin_GT47	2	250	2e-61	208.7
TkA01G073780	`PF00534`	Glycos_transf_1	30	51	0.26	11.5
TkA01G073780	`PF24785`	RXYLT1_C	73	100	2.2e-07	31.2
TkA01G073780	`PF24785`	RXYLT1_C	174	220	2.2e-07	31.2
TkA01G073780	`PF00534`	Glycos_transf_1	174	247	0.26	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN2`	Arabidopsis thaliana	sp\|Q9FFN2\|GLYT3_ARATH Probable glycosyltransferase At5g03795	44.800%	Swiss-Prot	Medium
`Q9SSE8`	Arabidopsis thaliana	sp\|Q9SSE8\|GLYT1_ARATH Probable glycosyltransferase At3g07620	43.800%	Swiss-Prot	Medium
`Q94AA9`	Arabidopsis thaliana	sp\|Q94AA9\|XGD1_ARATH Xylogalacturonan beta-1,3-xylosyltransferase	42.500%	Swiss-Prot	Medium
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	41.800%	Swiss-Prot	Medium
`Q9LFP3`	Arabidopsis thaliana	sp\|Q9LFP3\|GLYT4_ARATH Probable glycosyltransferase At5g11130	43.000%	Swiss-Prot	Medium

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