RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G071830
Reference: TK1151 Chr: Chr01 Coordinates: 18445383-18455086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4865 bp · TkA01G071830|TK1151|cDNA

CACACATCAAGTTCATAAACTCGCAAATCAACACCAAAAAACTCACATTCATTTCATCATCAAAAGCGATTCTACTTCAATTCCTTTATGTGATAATCAATCATGGAAGGCGGTGATGTTTTTAGAGTTAGTAGTGCACGAATTAGTAGTTCCAACATATGGAGAAATAGTGGAAGAGATATTTTTTCAAGATCTTCGTTAGATGAAGATGATGAAGAAGCATTAAAATGGGCTGCAATTGAAAAACTACCAACAAATCT...

CDS

Download CDS FASTA

2907 bp · TkA01G071830|TK1151|CDS

ATGGAAGGCGGTGATGTTTTTAGAGTTAGTAGTGCACGAATTAGTAGTTCCAACATATGGAGAAATAGTGGAAGAGATATTTTTTCAAGATCTTCGTTAGATGAAGATGATGAAGAAGCATTAAAATGGGCTGCAATTGAAAAACTACCAACAAATCTTCGACTAGAAAGAGGCATATTAACCGAAGAAAAAGGGCAACCAAGAGAGATTGATATCAAGAATCTTGGGTTAGTTGAAAAAAGAAATCTTTTGGAAAGACT...

Protein

Download Protein FASTA

968 aa · TkA01G071830|TK1151|PROTEIN

MEGGDVFRVSSARISSSNIWRNSGRDIFSRSSLDEDDEEALKWAAIEKLPTNLRLERGILTEEKGQPREIDIKNLGLVEKRNLLERLVKIAEEDNEKFLLKLKDRIDRVGLELPTIEVRFEHLNIDAEAYVGGRALPTIVNFIVNILEGSLNFLHLLPSRKIPLPILHDVSGIIKPGRMALLLGPPSSGKTTLLLALAGKLGSDLKVSGRVTYNGHEMNEFVPQRSSAYISQHDLHIGEMTVRETLAFSARCQGVGASYE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G071830
TK1151 IDTkA01G071830
OH-1004 IDLXL04_005258
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.900
Protein coverage (%)TK1151 96.694 / OH-1004 65.181
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G071830
LocationChr01:18445383-18455086 (+)
DescriptionSimilar to PDR1: Pleiotropic drug resistance protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0208300 May be a general defense protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005258 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002229 defense response to oomycetes Biological Process
GO:0009408 response to heat Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009914 hormone transport Biological Process
GO:0010193 response to ozone Biological Process
GO:0010496 intercellular transport Biological Process
KEGG gene cross-reference
ath:AT1G15520
dosa:Os01g0609300
nta:107799533
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.640
Rank 1 · TkA01G071830 · TK1151
Endoplasmic reticulum0.145
Rank 2 · TkA01G071830 · TK1151
Lysosome / Vacuole0.111
Rank 3 · TkA01G071830 · TK1151
Cytoplasm0.106
Rank 4 · TkA01G071830 · TK1151
Golgi apparatus0.064
Rank 5 · TkA01G071830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13207AAA_1762-128 aa
PF14510ABC_trans_N92-142 aa
PF09818ABC_ATPase161-199 aa
PF00005ABC_tran167-348 aa
PF20720nSTAND3169-201 aa
PF13481AAA_25170-225 aa
PF02367TsaE173-207 aa
PF25199nSTAND_NTPase5175-201 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G071830PF13207AAA_17621280.006817.4
TkA01G071830PF14510ABC_trans_N921421.3e-0629.4
TkA01G071830PF09818ABC_ATPase1611990.2710.9
TkA01G071830PF00005ABC_tran1673488.7e-2795.1
TkA01G071830PF20720nSTAND31692010.00318.0
TkA01G071830PF13481AAA_251702252.1e-0628.2
TkA01G071830PF02367TsaE1732070.09113.4
TkA01G071830PF25199nSTAND_NTPase51752010.1213.0
TkA01G071830PF13555AAA_291771970.0001422.3
TkA01G071830PF03193RsgA_GTPase1772010.02515.1
TkA01G071830PF13604AAA_301771980.06613.7
TkA01G071830PF06068TIP491772060.1212.2
TkA01G071830PF13191AAA_161782853.3e-0525.2
TkA01G071830PF13401AAA_221782030.003518.4
TkA01G071830PF13173AAA_141782020.04614.4
TkA01G071830PF06414Zeta_toxin1792450.1312.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GU88Oryza sativa subsp. japonicasp|Q8GU88|AB39G_ORYSJ ABC transporter G family member 3967.300%Swiss-ProtHigh

JBrowse

View in Genome Browser