TkA01G068950 | RubberDandelionOmics

Gene overview

TkA01G068950

Reference: TK1151 Chr: Chr01 Coordinates: 17648285-17649071 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

336 bp · TkA01G068950|TK1151|cDNA

ATCATCTCTGAAAGAAGTAGAGCACTCCTTCAAGACATCGCCACTATCACAGGAGCCAAGTACCTGTCGAGTGAATCGGGTTTGCTTATCGAAAACGTATCAGTTGGGCAACTTGGAAGGGCAAAGGTTGTTACAATCAGCCAAGACTCGACCAGCATCAATGCTAACGCTGTATCTAAAGTTGAGATCGAGATAAGAGTTGAGCAAATCAAGAAACAATTATTTGAAACAGATTCGGTCTACGATCCTGAAGAACTTAC...

CDS

Download CDS FASTA

336 bp · TkA01G068950|TK1151|CDS

ATCATCTCTGAAAGAAGTAGAGCACTCCTTCAAGACATCGCCACTATCACAGGAGCCAAGTACCTGTCGAGTGAATCGGGTTTGCTTATCGAAAACGTATCAGTTGGGCAACTTGGAAGGGCAAAGGTTGTTACAATCAGCCAAGACTCGACCAGCATCAATGCTAACGCTGTATCTAAAGTTGAGATCGAGATAAGAGTTGAGCAAATCAAGAAACAATTATTTGAAACAGATTCGGTCTACGATCCTGAAGAACTTAC...

Protein

Download Protein FASTA

111 aa · TkA01G068950|TK1151|PROTEIN

IISERSRALLQDIATITGAKYLSSESGLLIENVSVGQLGRAKVVTISQDSTSINANAVSKVEIEIRVEQIKKQLFETDSVYDPEELTKRIANLTQGTHLLKGKLRGEKKGK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G068950`
TK1151 ID	TkA01G068950
OH-1004 ID	LXL04_032197
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	34.700
Protein coverage (%)	TK1151 85.586 / OH-1004 15.677 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G068950

Location Chr01:17648285-17649071 (-)

Description Similar to At3g13860: Chaperonin CPN60-like 2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28000`	Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032197 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000373 Group II intron splicing Biological Process

GO:0006457 protein folding Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0009408 response to heat Biological Process

GO:0042026 protein refolding Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G13860

ath:AT3G23990

zma:542707

zma:542736

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · TkA01G068950 · TK1151

Nucleus0.382

Rank 2 · TkA01G068950 · TK1151

Mitochondrion0.076

Rank 3 · TkA01G068950 · TK1151

Cell membrane0.074

Rank 4 · TkA01G068950 · TK1151

Endoplasmic reticulum0.058

Rank 5 · TkA01G068950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06258Mito_fiss_Elm117-59 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G068950	`PF06258`	Mito_fiss_Elm1	17	59	0.1	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P21238`	Arabidopsis thaliana	sp\|P21238\|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic	55.100%	Swiss-Prot	High

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