TkA01G058100 | RubberDandelionOmics

Gene overview

TkA01G058100

Reference: TK1151 Chr: Chr01 Coordinates: 14978801-14980561 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1406 bp · TkA01G058100|TK1151|cDNA

AAACCAAGATCTTTGAAATGTCACCCTTTTTTCTCCATCCATCTCTATTTTACTTTTAACATCGTGGAAATGGGAAGAGCACCTTGTTGCGAAAAGGTAGGGCTCAAGAAGGGGAGATGGACTGCCGAAGAAGATGACACATTAACTAAATACATTCAAGCCAATGGAGAAGGCAACTGGAAATCTTTACCCAAAAATGCAGGGTTGTTGAGGTGTGGAAAAAGTTGCAGGCTGAGATGGATAAATTACTTGAGAGGTGA...

CDS

Download CDS FASTA

963 bp · TkA01G058100|TK1151|CDS

ATGGGAAGAGCACCTTGTTGCGAAAAGGTAGGGCTCAAGAAGGGGAGATGGACTGCCGAAGAAGATGACACATTAACTAAATACATTCAAGCCAATGGAGAAGGCAACTGGAAATCTTTACCCAAAAATGCAGGGTTGTTGAGGTGTGGAAAAAGTTGCAGGCTGAGATGGATAAATTACTTGAGAGGTGATTTGAAGAGAGGTAAAATGACTCTCGAAGAGGACGAAATGATCGTCAAGTTACATAAAGCTTTTGGGAA...

Protein

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320 aa · TkA01G058100|TK1151|PROTEIN

MGRAPCCEKVGLKKGRWTAEEDDTLTKYIQANGEGNWKSLPKNAGLLRCGKSCRLRWINYLRGDLKRGKMTLEEDEMIVKLHKAFGNRWSMIASHLPGRTDNEIKNYWNSCLSRQIYRFFTGKSGVTLTSIDVDNQKKQRIGRVSRKVAKKYNNDGGFKKNKSTHLLATKLSSPSVIMDKQVVPKKGDCSTIVTQYVEESQVYDNGVSDEVGSSGLSSQDGEVVDIGYFLEREAMDPSGVLTIHDDEQIEQMMAENDVVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G058100`
TK1151 ID	TkA01G058100
OH-1004 ID	LXL04_005380
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G058100

Location Chr01:14978801-14980561 (+)

Description Similar to MYB12: Transcription factor MYB12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49330`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At3g62610`	Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The AtMYB11 gene from Arabidopsis is expressed in meristematic cells and modulates growth in planta and organogenesis in vitro.2008 · DOI: 10.1093/jxb/ern027 The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At2g47460`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis.2005 · DOI: 10.1104/pp.104.058032 Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005380 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006950 response to stress Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009733 response to auxin Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0010224 response to UV-B Biological Process

GO:0043477 pigment biosynthetic process involved in pigment accumulation Biological Process

GO:0043480 pigment accumulation in tissues Biological Process

KEGG gene cross-reference

ath:AT2G47460

ath:AT3G62610

ath:AT5G49330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA01G058100 · TK1151

Cytoplasm0.089

Rank 2 · TkA01G058100 · TK1151

Cell membrane0.024

Rank 3 · TkA01G058100 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA01G058100 · TK1151

Plastid0.011

Rank 5 · TkA01G058100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding14-61 aa

PF15963Myb_DNA-bind_714-33 aa

PF23082Myb_DNA-binding_216-35 aa

PF13921Myb_DNA-bind_617-77 aa

PF08914Myb_Rap117-64 aa

PF00249Myb_DNA-binding67-112 aa

PF13921Myb_DNA-bind_671-118 aa

PF08914Myb_Rap171-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G058100	`PF00249`	Myb_DNA-binding	14	61	5.5e-34	116.8
TkA01G058100	`PF15963`	Myb_DNA-bind_7	14	33	0.065	13.8
TkA01G058100	`PF23082`	Myb_DNA-binding_2	16	35	0.15	12.9
TkA01G058100	`PF13921`	Myb_DNA-bind_6	17	77	4.3e-20	72.4
TkA01G058100	`PF08914`	Myb_Rap1	17	64	7.8	7.7
TkA01G058100	`PF00249`	Myb_DNA-binding	67	112	5.5e-34	116.8
TkA01G058100	`PF13921`	Myb_DNA-bind_6	71	118	4.3e-20	72.4
TkA01G058100	`PF08914`	Myb_Rap1	71	86	7.8	7.7
TkA01G058100	`PF23082`	Myb_DNA-binding_2	79	103	0.15	12.9
TkA01G058100	`PF15963`	Myb_DNA-bind_7	82	109	0.065	13.8
TkA01G058100	`PF13921`	Myb_DNA-bind_6	143	154	4.3e-20	72.4
TkA01G058100	`PF08914`	Myb_Rap1	308	315	7.8	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ07`	Arabidopsis thaliana	sp\|Q9FJ07\|MY111_ARATH Transcription factor MYB111	79.200%	Swiss-Prot	Low
`Q9LZK4`	Arabidopsis thaliana	sp\|Q9LZK4\|MYB11_ARATH Transcription factor MYB11	61.600%	Swiss-Prot	Medium
`O22264`	Arabidopsis thaliana	sp\|O22264\|MYB12_ARATH Transcription factor MYB12	65.400%	Swiss-Prot	Low

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