TkA01G057760 | RubberDandelionOmics

Gene overview

TkA01G057760

Reference: TK1151 Chr: Chr01 Coordinates: 14893762-14895469 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

837 bp · TkA01G057760|TK1151|cDNA

GTTTTGTTCATCAAGAATGTAATAAATTGCAGATAGAATTCATTACTCATCACATATGCATTCATCTACCAACATGAAGAAATGGCTTTTACATCTTGTGCTCCTATTCCTCATTCTTCCCATAAAAGGAGAGTCTGAAACTGGAATAGCTGGAACTGGAATCGGGTATTTACCGGAACCAAATGGCGATGGCAATGGTGGTCATGGGGTGGAGGGTGGTGGCGCTGATGAACATGACCCTGAGGTGGTTATTGAGAAGG...

CDS

Download CDS FASTA

573 bp · TkA01G057760|TK1151|CDS

ATGCATTCATCTACCAACATGAAGAAATGGCTTTTACATCTTGTGCTCCTATTCCTCATTCTTCCCATAAAAGGAGAGTCTGAAACTGGAATAGCTGGAACTGGAATCGGGTATTTACCGGAACCAAATGGCGATGGCAATGGTGGTCATGGGGTGGAGGGTGGTGGCGCTGATGAACATGACCCTGAGGTGGTTATTGAGAAGGCTCTTGAATGTTTTGGTGATAAACATATATATAATAGCTGTGAAGAGTCTTATAG...

Protein

Download Protein FASTA

190 aa · TkA01G057760|TK1151|PROTEIN

MHSSTNMKKWLLHLVLLFLILPIKGESETGIAGTGIGYLPEPNGDGNGGHGVEGGGADEHDPEVVIEKALECFGDKHIYNSCEESYRLTESGQLHVPPGYTDEYCSGPCLKETHHVLDCIDDMLSKYVFYNHATIEDVKETIKEGCSYGPHRGDFNVAEHIEGDEGNAYKLSFSMLFGLPSLVLVINLLY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G057760`
TK1151 ID	TkA01G057760
OH-1004 ID	LXL04_005382
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 21.300 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G057760`
Location	Chr01:14893762-14895469 (+)
Description	Similar to PPR40: Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005382` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006397 mRNA processing Biological Process GO:0006979 response to oxidative stress Biological Process GO:0009651 response to salt stress Biological Process GO:0009737 response to abscisic acid Biological Process GO:0042775 mitochondrial ATP synthesis coupled electron transport Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference	ath:AT3G16890 ath:AT5G39710 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.421

Rank 1 · TkA01G057760 · TK1151

Cell membrane0.318

Rank 2 · TkA01G057760 · TK1151

Endoplasmic reticulum0.184

Rank 3 · TkA01G057760 · TK1151

Cytoplasm0.169

Rank 4 · TkA01G057760 · TK1151

Golgi apparatus0.119

Rank 5 · TkA01G057760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24865DUF773164-161 aa

PF02320UCR_hinge70-129 aa

PF02320UCR_hinge137-147 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G057760	`PF24865`	DUF7731	64	161	1.2e-43	147.8
TkA01G057760	`PF02320`	UCR_hinge	70	129	0.13	13.1
TkA01G057760	`PF02320`	UCR_hinge	137	147	0.13	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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