TkA01G056490 | RubberDandelionOmics

Gene overview

TkA01G056490

Reference: TK1151 Chr: Chr01 Coordinates: 14604497-14606258 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1676 bp · TkA01G056490|TK1151|cDNA

ATCGACATGGTACAATATATGATGTTGCTAGACCTTATTAACAAGCATGATTATAACTCTATTCTAAGTGCGACATTCATACATTCATACATTCATTCAACATTATATGAAAATGTTTCCTTTAGAGCAATTTGATATTTCTAAACTTCCGTACGACGATGCTTCTCCCGACAATCTTGATACTCTTTGTTTCAAATTCACCTCACCACTTCTTCAAAATACATTAAAATCTCCAGATTTCAAATTGGAAGACGATGAAC...

CDS

Download CDS FASTA

1554 bp · TkA01G056490|TK1151|CDS

ATGAAAATGTTTCCTTTAGAGCAATTTGATATTTCTAAACTTCCGTACGACGATGCTTCTCCCGACAATCTTGATACTCTTTGTTTCAAATTCACCTCACCACTTCTTCAAAATACATTAAAATCTCCAGATTTCAAATTGGAAGACGATGAACAAAACAACCCTTTTGCATCACTTGGAATCGTTACAGACTTCCCAACCACATCATCAACATTTAATGGCGGCAAACAACTTCATGTTCCGATATGTAATAACGTTGA...

Protein

Download Protein FASTA

517 aa · TkA01G056490|TK1151|PROTEIN

MKMFPLEQFDISKLPYDDASPDNLDTLCFKFTSPLLQNTLKSPDFKLEDDEQNNPFASLGIVTDFPTTSSTFNGGKQLHVPICNNVEDSETKRQNLSTPEKIRIAGQQFIDSYSLKADEVSELITHPFAVSFSGLSDDETKDIQLLLTLLSSAEKAGKKQFNRAKKLLQLCSDISLNEGNPVERLVYYFSEAIRMKINSEIGKVALNGLESMQFDLQEALMNVDTCIFAFHQKVPLSQVCQFSSFHTIIDNLYKSRKIHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G056490`
TK1151 ID	TkA01G056490
OH-1004 ID	LXL04_005388
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.300
Protein coverage (%)	TK1151 99.613 / OH-1004 48.319 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G056490

Location Chr01:14604497-14606258 (+)

Description Similar to RGL2: DELLA protein RGL2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63100`	Probable transcription factor involved in plant development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005388 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

KEGG gene cross-reference

ath:AT3G03450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.618

Rank 1 · TkA01G056490 · TK1151

Cytoplasm0.430

Rank 2 · TkA01G056490 · TK1151

Cell membrane0.048

Rank 3 · TkA01G056490 · TK1151

Endoplasmic reticulum0.040

Rank 4 · TkA01G056490 · TK1151

Plastid0.028

Rank 5 · TkA01G056490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23164UBL_AVO164-88 aa

PF03514GRAS148-515 aa

PF23164UBL_AVO1288-347 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G056490	`PF23164`	UBL_AVO1	64	88	0.22	12.1
TkA01G056490	`PF03514`	GRAS	148	515	4.4e-76	256.9
TkA01G056490	`PF23164`	UBL_AVO1	288	347	0.22	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9CAN3`	Arabidopsis thaliana	sp\|Q9CAN3\|SCL28_ARATH Scarecrow-like protein 28	25.700%	Swiss-Prot	Low

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