TkA01G051040 | RubberDandelionOmics

Gene overview

TkA01G051040

Reference: TK1151 Chr: Chr01 Coordinates: 13250518-13252970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1563 bp · TkA01G051040|TK1151|cDNA

ATGGAAGGTCTTCACGTTTCCATCAACCATGCTATTCAAAGCGGAGTGTATAAGGGCGTTAAAATTGGCAATCCGGAGTATCCTATCTCGCATCTTTTTTTTGCTGATGATGCAATTTATATCGCTCCTAAAGGCGTTATTAAAGACATGGAAGATATCAGGAGAAAATTTTTCTGGGGCGAAACAAGTGAAGAAAAGGAGATTCCTTGGGTTAAATGGTCCGAAGTTCTTAGACCTAGAGAGGACGGTGGCCTGGGGAT...

CDS

Download CDS FASTA

1563 bp · TkA01G051040|TK1151|CDS

ATGGAAGGTCTTCACGTTTCCATCAACCATGCTATTCAAAGCGGAGTGTATAAGGGCGTTAAAATTGGCAATCCGGAGTATCCTATCTCGCATCTTTTTTTTGCTGATGATGCAATTTATATCGCTCCTAAAGGCGTTATTAAAGACATGGAAGATATCAGGAGAAAATTTTTCTGGGGCGAAACAAGTGAAGAAAAGGAGATTCCTTGGGTTAAATGGTCCGAAGTTCTTAGACCTAGAGAGGACGGTGGCCTGGGGAT...

Protein

Download Protein FASTA

520 aa · TkA01G051040|TK1151|PROTEIN

MEGLHVSINHAIQSGVYKGVKIGNPEYPISHLFFADDAIYIAPKGVIKDMEDIRRKFFWGETSEEKEIPWVKWSEVLRPREDGGLGINSMKHLNQALIAKWIWRFHNEDNAVWVKILKCIHGKNCLTYDSSDAWSNSNWKNIIKHMRNPDIMELIKRKCGNEVDTSFWKDQWVGEMPLMLKYPRLFTAEEEEDCSVADRLLYQGDDERDYEDNFYSESKSDLGSYFNMEGDNNSWFTLMKKFKFVKERIKKWQDDREANR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G051040`
TK1151 ID	TkA01G051040
OH-1004 ID	LXL04_005358
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	47.000
Protein coverage (%)	TK1151 56.731 / OH-1004 15.472 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G051040`
Location	Chr01:13250518-13252970 (-)
Description	Similar to LINE-1 retrotransposable element ORF2 protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005358` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.668

Rank 1 · TkA01G051040 · TK1151

Nucleus0.310

Rank 2 · TkA01G051040 · TK1151

Cell membrane0.116

Rank 3 · TkA01G051040 · TK1151

Mitochondrion0.035

Rank 4 · TkA01G051040 · TK1151

Endoplasmic reticulum0.034

Rank 5 · TkA01G051040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_129-43 aa

PF20822Cmr2_hel_dom1137-150 aa

PF00078RVT_1264-322 aa

PF00078RVT_1439-519 aa

PF20822Cmr2_hel_dom1444-501 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G051040	`PF00078`	RVT_1	29	43	7.4e-09	36.5
TkA01G051040	`PF20822`	Cmr2_hel_dom1	137	150	0.085	14.1
TkA01G051040	`PF00078`	RVT_1	264	322	7.4e-09	36.5
TkA01G051040	`PF00078`	RVT_1	439	519	7.4e-09	36.5
TkA01G051040	`PF20822`	Cmr2_hel_dom1	444	501	0.085	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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