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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G050430
Reference: TK1151 Chr: Chr01 Coordinates: 13042344-13044314 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1971 bp · TkA01G050430|TK1151|cDNA

ATGCATTTCAAAGAGCACTGTTCGTTGCTGCTAAAAGTCCGAAAACCTTCAATCCCTTTTCTTTTCAACACAAGCACGAGTCTCAATCCACAGATTCACCAAGACCCAAAAACAGAGTTGAGAGAATCCGATGTCTTGAAGAGATTGAATCAAGAAAAAGATATTACTTCAGCTCTCGAATACTTCAAATTCATATCCAATTCGAGATCTTTCAAGCATACAACTCTCACTTACCAAACAATTATCGAAAAGCTAGGATA...

CDS

Download CDS FASTA

1971 bp · TkA01G050430|TK1151|CDS

ATGCATTTCAAAGAGCACTGTTCGTTGCTGCTAAAAGTCCGAAAACCTTCAATCCCTTTTCTTTTCAACACAAGCACGAGTCTCAATCCACAGATTCACCAAGACCCAAAAACAGAGTTGAGAGAATCCGATGTCTTGAAGAGATTGAATCAAGAAAAAGATATTACTTCAGCTCTCGAATACTTCAAATTCATATCCAATTCGAGATCTTTCAAGCATACAACTCTCACTTACCAAACAATTATCGAAAAGCTAGGATA...

Protein

Download Protein FASTA

656 aa · TkA01G050430|TK1151|PROTEIN

MHFKEHCSLLLKVRKPSIPFLFNTSTSLNPQIHQDPKTELRESDVLKRLNQEKDITSALEYFKFISNSRSFKHTTLTYQTIIEKLGYEYDVNEVQYLLQQMKLEGINCSEDLFISVINSYRRAGSADQALKTFYRIQDFGCKPTVKIYNHLLDALLNENKFHMINPIYSNMKRDGMEPDKYTYNILLKALCKNNRIDSAHKVLVEMSKKGCPPDEVSYTTIVSSMCNLGKVKEAKELVQSNIGDFPMISVYNALIMGMCK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G050430
TK1151 IDTkA01G050430
OH-1004 IDLXL04_005440
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 79.573 / OH-1004 69.786
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G050430
LocationChr01:13042344-13044314 (-)
DescriptionSimilar to At3g48810: Pentatricopeptide repeat-containing protein At3g48810
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g48810 Pentatricopeptide repeat-containing protein At3g48810. No verified direct reference in this release
At3g14580 Pentatricopeptide repeat-containing protein At3g14580, mitochondrial. No verified direct reference in this release
At2g17525 Pentatricopeptide repeat-containing protein At2g17525, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005440 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G48810
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.872
Rank 1 · TkA01G050430 · TK1151
Plastid0.062
Rank 2 · TkA01G050430 · TK1151
Nucleus0.041
Rank 3 · TkA01G050430 · TK1151
Cytoplasm0.029
Rank 4 · TkA01G050430 · TK1151
Cell membrane0.011
Rank 5 · TkA01G050430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long33-159 aa
PF12921ATP1349-77 aa
PF23276TPR_2450-134 aa
PF29070MSC6_N56-203 aa
PF18662HTH_5665-86 aa
PF13041PPR_275-109 aa
PF12854PPR_175-101 aa
PF01535PPR77-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G050430PF17177PPR_long331598.8e-41140.3
TkA01G050430PF12921ATP1349773.6e-0524.3
TkA01G050430PF23276TPR_24501343.9e-37127.8
TkA01G050430PF29070MSC6_N562031.6e-37130.3
TkA01G050430PF18662HTH_5665860.3911.4
TkA01G050430PF13041PPR_2751097.7e-138449.3
TkA01G050430PF12854PPR_1751012e-116380.1
TkA01G050430PF01535PPR771061.3e-89289.1
TkA01G050430PF25569TPR_ZFYVE26771180.07614.0
TkA01G050430PF08579RPM2801563.6e-0628.1
TkA01G050430PF24760TPR_IF140_C871332.1e-0525.6
TkA01G050430PF19189Mtf2901090.1512.4
TkA01G050430PF23279TPR_25941390.04714.5
TkA01G050430PF13812PPR_3971551.1e-76253.6
TkA01G050430PF23276TPR_24981583.9e-37127.8
TkA01G050430PF12921ATP131091333.6e-0524.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M302Arabidopsis thalianasp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g4881060.900%Swiss-ProtLow
Q9LUD6Arabidopsis thalianasp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580, mitochondrial27.300%Swiss-ProtLow
Q84VG6Arabidopsis thalianasp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525, mitochondrial26.700%Swiss-ProtLow

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