TkA01G048020 | RubberDandelionOmics

Gene overview

TkA01G048020

Reference: TK1151 Chr: Chr01 Coordinates: 12404466-12410359 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2033 bp · TkA01G048020|TK1151|cDNA

TGGACCCACTGCCACCTGGTAGTTGACACGTGTTAGTCCCAATCACGTCCCTACTTTTCTATATATACACCGCTTGTTATAGCCTCATCACCCATCTTTCCCCCTCTATCTCTCTCTCTCCTGACAAACACTCTCACTCAAATTCGTTTCAGATTTGTTGTTTGATCGAGGATTCGAGAGCAAATATGTTTATCGAGAGCTTTAAGGTAGAAAGCCCTAATGTTAAGTACACTGAGGATGAAATACACTCTCTGTACAAT...

CDS

Download CDS FASTA

1533 bp · TkA01G048020|TK1151|CDS

ATGTTTATCGAGAGCTTTAAGGTAGAAAGCCCTAATGTTAAGTACACTGAGGATGAAATACACTCTCTGTACAATTACGATACCACAGAGCTCGTCCACGAGGAGAAGGACGGTGCTTATCAATGGGTTGTTAAGCCGAAAACTGTCAAATACGAGTTCAAAACTCAAACCAATGTTCCAAAATTAGGAGTTATGCTTGTCGGATGGGGAGGCAACAATGGCTCAACCCTAACCGCCGGCGTTATCGCAAATCGGGAGGG...

Protein

Download Protein FASTA

510 aa · TkA01G048020|TK1151|PROTEIN

MFIESFKVESPNVKYTEDEIHSLYNYDTTELVHEEKDGAYQWVVKPKTVKYEFKTQTNVPKLGVMLVGWGGNNGSTLTAGVIANREGISWATKDKVQQANYFGSLTQASTIRVGSFNGEEIYAPFKSLLPMVNPDDIVFGGWDISSMNLADSMARARVLDIDLQKQLRPYMESMVPLPGIFDPDFIAANQGSRADNVIKGNKNEQIQKIIKDIREFKEANKVDKVVVLWTANTERYSNVVVGLNDTVENLFASIDKNESE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G048020`
TK1151 ID	TkA01G048020
OH-1004 ID	LXL04_015950
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G048020`
Location	Chr01:12404466-12410359 (+)
Description	Similar to Inositol-3-phosphate synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_015950` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006021 inositol biosynthetic process Biological Process GO:0008654 phospholipid biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004512 inositol-3-phosphate synthase activity Molecular Function
KEGG gene cross-reference	nta:107766502 peu:105130253 sind:105176482 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.680

Rank 1 · TkA01G048020 · TK1151

Nucleus0.223

Rank 2 · TkA01G048020 · TK1151

Peroxisome0.109

Rank 3 · TkA01G048020 · TK1151

Mitochondrion0.091

Rank 4 · TkA01G048020 · TK1151

Plastid0.066

Rank 5 · TkA01G048020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07994NAD_binding_562-494 aa

PF16468DUF5049203-246 aa

PF01658Inos-1-P_synth310-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G048020	`PF07994`	NAD_binding_5	62	494	2.2e-145	484.8
TkA01G048020	`PF16468`	DUF5049	203	246	0.069	13.8
TkA01G048020	`PF01658`	Inos-1-P_synth	310	423	6.9e-38	129.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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