TkA01G042080 | RubberDandelionOmics

Gene overview

TkA01G042080

Reference: TK1151 Chr: Chr01 Coordinates: 10812543-10814091 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1085 bp · TkA01G042080|TK1151|cDNA

CCCAATGTCACGTGCTTCTCACGCTCCCCTAATCCATTTCTCTTCCACCTGCACCTCCCTCCTCCCACTGTTACACACAGATATGGCACTCAGTACGCTTTCATCGCTACCACTTAAATCCCTAAAAATCATACCTTCTCATGTCTCCTTCAATCATCTCAACCCAAATCCTTCCTCAAAATCTATAACATGTCGATTAAATCCACAAAATGCCATTTCCACCAAAGGTTTAATTTTGGCTATAGTGTCATCGGATGTTG...

CDS

Download CDS FASTA

924 bp · TkA01G042080|TK1151|CDS

ATGTCACGTGCTTCTCACGCTCCCCTAATCCATTTCTCTTCCACCTGCACCTCCCTCCTCCCACTGTTACACACAGATATGGCACTCAGTACGCTTTCATCGCTACCACTTAAATCCCTAAAAATCATACCTTCTCATGTCTCCTTCAATCATCTCAACCCAAATCCTTCCTCAAAATCTATAACATGTCGATTAAATCCACAAAATGCCATTTCCACCAAAGGTTTAATTTTGGCTATAGTGTCATCGGATGTTGCAGA...

Protein

Download Protein FASTA

307 aa · TkA01G042080|TK1151|PROTEIN

MSRASHAPLIHFSSTCTSLLPLLHTDMALSTLSSLPLKSLKIIPSHVSFNHLNPNPSSKSITCRLNPQNAISTKGLILAIVSSDVAENIEPRRWKALVSTALVAAVITFSSDMSALADLNKYEADTRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAILVRTVLTRSDLGRAVIEGADFSDAVLDLTQKQALCKYASGTNPVTGVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G042080`
TK1151 ID	TkA01G042080
OH-1004 ID	LXL04_005494
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G042080

Location Chr01:10812543-10814091 (-)

Description Similar to TL20.3: Thylakoid lumenal protein TL20.3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12250`	Pentapeptide repeat protein of unknown function.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031977 thylakoid lumen Cellular Component

KEGG gene cross-reference

ath:AT1G12250

ath:AT2G44920

ath:AT5G53490

cyt:cce_1272

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · TkA01G042080 · TK1151

Mitochondrion0.021

Rank 2 · TkA01G042080 · TK1151

Nucleus0.013

Rank 3 · TkA01G042080 · TK1151

Cytoplasm0.010

Rank 4 · TkA01G042080 · TK1151

Cell membrane0.009

Rank 5 · TkA01G042080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13599Pentapeptide_422-51 aa

PF00805Pentapeptide136-175 aa

PF13599Pentapeptide_4138-179 aa

PF23894LD_SV2143-211 aa

PF13576Pentapeptide_3153-181 aa

PF13576Pentapeptide_3153-196 aa

PF00805Pentapeptide161-198 aa

PF13599Pentapeptide_4167-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G042080	`PF13599`	Pentapeptide_4	22	51	2.8e-07	31.2
TkA01G042080	`PF00805`	Pentapeptide	136	175	1.1e-21	76.7
TkA01G042080	`PF13599`	Pentapeptide_4	138	179	2.8e-07	31.2
TkA01G042080	`PF23894`	LD_SV2	143	211	0.0033	18.4
TkA01G042080	`PF13576`	Pentapeptide_3	153	181	1.9e-11	44.7
TkA01G042080	`PF13576`	Pentapeptide_3	153	196	1.9e-11	44.7
TkA01G042080	`PF00805`	Pentapeptide	161	198	1.1e-21	76.7
TkA01G042080	`PF13599`	Pentapeptide_4	167	239	2.8e-07	31.2
TkA01G042080	`PF13576`	Pentapeptide_3	185	226	1.9e-11	44.7
TkA01G042080	`PF00805`	Pentapeptide	203	238	1.1e-21	76.7
TkA01G042080	`PF13576`	Pentapeptide_3	204	237	1.9e-11	44.7
TkA01G042080	`PF29042`	DEF258-like	293	305	0.27	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1Q1`	Arabidopsis thaliana	sp\|Q8H1Q1\|TL203_ARATH Thylakoid lumenal protein TL20.3, chloroplastic	71.900%	Swiss-Prot	High

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