TkA01G041120 | RubberDandelionOmics

Gene overview

TkA01G041120

Reference: TK1151 Chr: Chr01 Coordinates: 10583270-10583946 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

563 bp · TkA01G041120|TK1151|cDNA

TATTTACACTATCGGTCCTTAAAAAGAAAAACACCAGAAAACGAGTTTCAGTTCGCTCCTTGCGTCGTCTTTCTCCTTGCGTCTGCGACGTTTTGCGTCTCCATCAGAAAAACGAGTTTGAAGCTTAGTTTCTTCGCTCCTTGCGGCGTATCCCTGCTCCTCCGCCGTTCCTGTTCGCCGCCGCCATCGAGCCGTCCACCGGCGCCTTACCCTTCCGCCGCTACCGACTTGAAGTGCCGAGGAGATTTATCTAACTCTGA...

CDS

Download CDS FASTA

480 bp · TkA01G041120|TK1151|CDS

TATTTACACTATCGGTCCTTAAAAAGAAAAACACCAGAAAACGAGTTTCAGTTCGCTCCTTGCGTCGTCTTTCTCCTTGCGTCTGCGACGTTTTGCGTCTCCATCAGAAAAACGAGTTTGAAGCTTAGTTTCTTCGCTCCTTGCGGCGTATCCCTGCTCCTCCGCCGTTCCTGTTCGCCGCCGCCATCGAGCCGTCCACCGGCGCCTTACCCTTCCGCCGCTACCGACTTGAAGTGCCGAGGAGATTTATCTAACTCTGA...

Protein

Download Protein FASTA

159 aa · TkA01G041120|TK1151|PROTEIN

YLHYRSLKRKTPENEFQFAPCVVFLLASATFCVSIRKTSLKLSFFAPCGVSLLLRRSCSPPPSSRPPAPYPSAATDLKCRGDLSNSDCNTCVKRIPEAIEKICGRDTIAARVQLYGCYMRYEVVGFPSAFLYKQCSSNRVSGCGFDDRLESALKQGLIV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G041120`
TK1151 ID	TkA01G041120
OH-1004 ID	LXL04_036824
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	81.700
Protein coverage (%)	TK1151 49.057 / OH-1004 23.631 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G041120

Location Chr01:10583270-10583946 (-)

Description Similar to PDLP2: Plasmodesmata-located protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33330`	Modulates cell-to-cell trafficking.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036824 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009615 response to virus Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0046739 transport of virus in multicellular host Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0001872 (1->3)-beta-D-glucan binding Molecular Function

KEGG gene cross-reference

ath:AT1G04520

ath:AT2G33330

ath:AT3G04370

ath:AT5G37660

ath:AT5G43980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.544

Rank 1 · TkA01G041120 · TK1151

Cell membrane0.139

Rank 2 · TkA01G041120 · TK1151

Cytoplasm0.135

Rank 3 · TkA01G041120 · TK1151

Endoplasmic reticulum0.131

Rank 4 · TkA01G041120 · TK1151

Nucleus0.078

Rank 5 · TkA01G041120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657Stress-antifung78-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G041120	`PF01657`	Stress-antifung	78	122	3.4e-07	31.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22784`	Arabidopsis thaliana	sp\|O22784\|PDLP3_ARATH Plasmodesmata-located protein 3	48.800%	Swiss-Prot	Low

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