LXL04_036824 | RubberDandelionOmics

Gene overview

LXL04_036824

Reference: OH-1004 Chr: Chr08 Coordinates: 48841418-48843216 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1044 bp · LXL04_036824|LXL04_036824|OH1004|cDNA

ATGAATCACCACCGAAATCCATTAAAAAAAAACCCTTTTATACATCTTCTTCCCCAATCTTCAATTCCATTTTGTTTCTTCTTCCTCAAATTCCCAATTCACTTGCAGAAACCCCACATGGGTCCTCCATTAACAACCCCTTTCTTCCTCATCGTACTCTCCATCTGTTCTTCAACTTGTTCGTATGCAGACCTCACAACTTTCGTTTACAAAGGATGTGCTAACCAAAGATTTCAAGACCCATCTGGTATCTCCTCGCA...

CDS

Download CDS FASTA

1044 bp · LXL04_036824|LXL04_036824|OH1004|CDS

ATGAATCACCACCGAAATCCATTAAAAAAAAACCCTTTTATACATCTTCTTCCCCAATCTTCAATTCCATTTTGTTTCTTCTTCCTCAAATTCCCAATTCACTTGCAGAAACCCCACATGGGTCCTCCATTAACAACCCCTTTCTTCCTCATCGTACTCTCCATCTGTTCTTCAACTTGTTCGTATGCAGACCTCACAACTTTCGTTTACAAAGGATGTGCTAACCAAAGATTTCAAGACCCATCTGGTATCTCCTCGCA...

Protein

Download Protein FASTA

347 aa · LXL04_036824|LXL04_036824|OH1004|PROTEIN

MNHHRNPLKKNPFIHLLPQSSIPFCFFFLKFPIHLQKPHMGPPLTTPFFLIVLSICSSTCSYADLTTFVYKGCANQRFQDPSGISSQNLKSLYANLISQSSTTNFYNTTTGNGQLTTSISGLYQCRGDLSNSDCNTCVKKIPEAIQKICGGDTIAARVQLDGCYMRYEVVGFPPASATTLLYKQCASNRASGSGFDDRLESALEQIQKGIGNGKGYYAAAYQSIYVLGQCEGDLGTADCVNCVKTAAENGRSACGSSLSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036824`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036824

Location Chr08:48841418-48843216 (-)

Description Similar to PDLP2: Plasmodesmata-located protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04520`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At2g33330`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g43980`	Modulates cell-to-cell trafficking.	The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition.2014 · DOI: 10.1371/journal.ppat.1004496
`At3g04370`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g37660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036824 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009615 response to virus Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0046739 transport of virus in multicellular host Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0001872 (1->3)-beta-D-glucan binding Molecular Function

KEGG gene cross-reference

ath:AT1G04520

ath:AT2G33330

ath:AT3G04370

ath:AT5G37660

ath:AT5G43980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.755

Rank 1 · LXL04_036824 · OH-1004

Extracellular0.122

Rank 2 · LXL04_036824 · OH-1004

Endoplasmic reticulum0.094

Rank 3 · LXL04_036824 · OH-1004

Cytoplasm0.081

Rank 4 · LXL04_036824 · OH-1004

Nucleus0.036

Rank 5 · LXL04_036824 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung80-168 aa

PF01657.23Stress-antifung185-272 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036824	`PF01657.23`	Stress-antifung	80	168	2.7e-28	99.2
LXL04_036824	`PF01657.23`	Stress-antifung	185	272	2.7e-28	99.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6NM73`	Arabidopsis thaliana	Plasmodesmata-located protein 2	45.338%	Swiss-Prot	moderate database homology
`O22784`	Arabidopsis thaliana	Plasmodesmata-located protein 3	44.482%	Swiss-Prot	moderate database homology
`Q8GXV7`	Arabidopsis thaliana	Plasmodesmata-located protein 1	42.662%	Swiss-Prot	moderate database homology
`Q6E263`	Arabidopsis thaliana	Plasmodesmata-located protein 4	31.231%	Swiss-Prot	moderate database homology
`Q0WPN8`	Arabidopsis thaliana	Plasmodesmata-located protein 7	31.304%	Swiss-Prot	moderate database homology

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