TkA01G038560 | RubberDandelionOmics

Gene overview

TkA01G038560

Reference: TK1151 Chr: Chr01 Coordinates: 9967525-9969866 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1248 bp · TkA01G038560|TK1151|cDNA

ATGGAGTTTGGCAACTTTGGACCCAAGAAACAAAACTTCAAGAAGCCAAACCATCAGCACAACTCTAACCCTAAGCCTAAACGTGCCGGACCTTGCCATGTCTACGGAGAGATTGGGCATTTTGCACGTGATTGTAAAGATCGCAAATCCGGACCTGTGGTGCATGCTATTGAGGAGGTTACCCTCATGGTAGCTAGTGTGAATATTGGAAATGTGTTCATGGTTTCCTCTCTGACTCGAGCGATTGCGGCTCGAGGGTG...

CDS

Download CDS FASTA

1248 bp · TkA01G038560|TK1151|CDS

ATGGAGTTTGGCAACTTTGGACCCAAGAAACAAAACTTCAAGAAGCCAAACCATCAGCACAACTCTAACCCTAAGCCTAAACGTGCCGGACCTTGCCATGTCTACGGAGAGATTGGGCATTTTGCACGTGATTGTAAAGATCGCAAATCCGGACCTGTGGTGCATGCTATTGAGGAGGTTACCCTCATGGTAGCTAGTGTGAATATTGGAAATGTGTTCATGGTTTCCTCTCTGACTCGAGCGATTGCGGCTCGAGGGTG...

Protein

Download Protein FASTA

415 aa · TkA01G038560|TK1151|PROTEIN

MEFGNFGPKKQNFKKPNHQHNSNPKPKRAGPCHVYGEIGHFARDCKDRKSGPVVHAIEEVTLMVASVNIGNVFMVSSLTRAIAARGWFVDTGATVHVCGQRHRFRTYRPAASGTVVVCADGHRAKVHGVGNVCLKFKDGCWVTPRDVLHVPAITKGLVAADKFDRAGFKMELWNGKIEITKGRTYVGNANNLGGMYRLSLEDEGSERSSVGDSSSIDVPNVDCIDVCVENGVNVFAKDETFDAFKLYKAEVENQLEKRIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G038560`
TK1151 ID	TkA01G038560
OH-1004 ID	LXL04_031228
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	30.000
Protein coverage (%)	TK1151 84.819 / OH-1004 10.314 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G038560`
Location	Chr01:9967525-9969866 (+)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031228` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.678

Rank 1 · TkA01G038560 · TK1151

Nucleus0.267

Rank 2 · TkA01G038560 · TK1151

Endoplasmic reticulum0.064

Rank 3 · TkA01G038560 · TK1151

Mitochondrion0.061

Rank 4 · TkA01G038560 · TK1151

Peroxisome0.058

Rank 5 · TkA01G038560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00098zf-CCHC36-46 aa

PF22936Pol_BBD87-168 aa

PF00098zf-CCHC121-125 aa

PF22936Pol_BBD206-234 aa

PF29688TnsB_C208-311 aa

PF00665rve242-294 aa

PF13683rve_3282-309 aa

PF25597SH3_retrovirus367-386 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G038560	`PF00098`	zf-CCHC	36	46	0.019	15.7
TkA01G038560	`PF22936`	Pol_BBD	87	168	4.4e-19	69.3
TkA01G038560	`PF00098`	zf-CCHC	121	125	0.019	15.7
TkA01G038560	`PF22936`	Pol_BBD	206	234	4.4e-19	69.3
TkA01G038560	`PF29688`	TnsB_C	208	311	1.6e-08	35.2
TkA01G038560	`PF00665`	rve	242	294	8.3e-08	33.1
TkA01G038560	`PF13683`	rve_3	282	309	2.1e-05	25.0
TkA01G038560	`PF25597`	SH3_retrovirus	367	386	0.059	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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