TkA01G038310 | RubberDandelionOmics

Gene overview

TkA01G038310

Reference: TK1151 Chr: Chr01 Coordinates: 9896246-9896697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

411 bp · TkA01G038310|TK1151|cDNA

ATGCCGGCAATTCCTTCGCCTTCCACCATTGATTCCTTCGCCTTCCACCTGAGGAAACTTGATTTGTCGAATAATTCGATCAATGGGTCAATTCCTTTGTCGTTGTATAATGCTACGGAGCTTACATTTCTCGATTTTTCGAATAATTTGATCTCCGACGAGCTTCGGGAGCTTGTTAGAGGGTGGGTGGGTCTTCAAGTTCTTAATGCTTCTGGGAACTCGTTAACAGGGAAGTTACGGGAGAGTCTTGGTGGTCTTCG...

CDS

Download CDS FASTA

411 bp · TkA01G038310|TK1151|CDS

ATGCCGGCAATTCCTTCGCCTTCCACCATTGATTCCTTCGCCTTCCACCTGAGGAAACTTGATTTGTCGAATAATTCGATCAATGGGTCAATTCCTTTGTCGTTGTATAATGCTACGGAGCTTACATTTCTCGATTTTTCGAATAATTTGATCTCCGACGAGCTTCGGGAGCTTGTTAGAGGGTGGGTGGGTCTTCAAGTTCTTAATGCTTCTGGGAACTCGTTAACAGGGAAGTTACGGGAGAGTCTTGGTGGTCTTCG...

Protein

Download Protein FASTA

136 aa · TkA01G038310|TK1151|PROTEIN

MPAIPSPSTIDSFAFHLRKLDLSNNSINGSIPLSLYNATELTFLDFSNNLISDELRELVRGWVGLQVLNASGNSLTGKLRESLGGLRNLTVVSLKNNYLHRNLPTGFDSVKFLDLSANFINGSLPKDFGGGDLVYQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G038310`
TK1151 ID	TkA01G038310
OH-1004 ID	LXL04_006765
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 22.794 / OH-1004 3.429 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G038310`
Location	Chr01:9896246-9896697 (-)
Description	Similar to At4g37250: Probable LRR receptor-like serine/threonine-protein kinase At4g37250
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006765` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process GO:0010030 positive regulation of seed germination Biological Process GO:0010069 zygote asymmetric cytokinesis in embryo sac Biological Process GO:0010070 zygote asymmetric cell division Biological Process GO:0042631 cellular response to water deprivation Biological Process GO:0042742 defense response to bacterium Biological Process GO:0046777 protein autophosphorylation Biological Process GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference	ath:AT1G48480 ath:AT1G66830 ath:AT2G01210 ath:AT4G34220 ath:AT4G37250 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.366

Rank 1 · TkA01G038310 · TK1151

Extracellular0.198

Rank 2 · TkA01G038310 · TK1151

Endoplasmic reticulum0.175

Rank 3 · TkA01G038310 · TK1151

Cytoplasm0.092

Rank 4 · TkA01G038310 · TK1151

Nucleus0.088

Rank 5 · TkA01G038310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24048LRR_NXF1-510-28 aa

PF23598LRR_1411-113 aa

PF00560LRR_116-37 aa

PF12799LRR_416-53 aa

PF13855LRR_816-51 aa

PF13516LRR_616-29 aa

PF23211LRR_LRWD117-53 aa

PF24141LRR_ComC25-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G038310	`PF24048`	LRR_NXF1-5	10	28	0.013	15.8
TkA01G038310	`PF23598`	LRR_14	11	113	0.0039	16.7
TkA01G038310	`PF00560`	LRR_1	16	37	4.9e-16	56.1
TkA01G038310	`PF12799`	LRR_4	16	53	1.3e-11	45.0
TkA01G038310	`PF13855`	LRR_8	16	51	1.7e-08	34.8
TkA01G038310	`PF13516`	LRR_6	16	29	0.04	14.7
TkA01G038310	`PF23211`	LRR_LRWD1	17	53	0.45	10.9
TkA01G038310	`PF24141`	LRR_ComC	25	133	0.017	15.6
TkA01G038310	`PF24048`	LRR_NXF1-5	37	99	0.013	15.8
TkA01G038310	`PF00560`	LRR_1	41	58	4.9e-16	56.1
TkA01G038310	`PF13516`	LRR_6	41	54	0.04	14.7
TkA01G038310	`PF13855`	LRR_8	60	99	1.7e-08	34.8
TkA01G038310	`PF00560`	LRR_1	65	86	4.9e-16	56.1
TkA01G038310	`PF12799`	LRR_4	65	99	1.3e-11	45.0
TkA01G038310	`PF13516`	LRR_6	65	77	0.04	14.7
TkA01G038310	`PF13516`	LRR_6	87	97	0.04	14.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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