TkA01G037220 | RubberDandelionOmics

Gene overview

TkA01G037220

Reference: TK1151 Chr: Chr01 Coordinates: 9628866-9630065 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

780 bp · TkA01G037220|TK1151|cDNA

ATGTTTCAATACGAACCTGGTATGCGAGTTGAGGTAATAGGCCATGCTGATGTTTATGTGAACTCATATTATGCAGCAAATGTAGTACATTCTGATCAACAGAATGTAGTAGTCACTTATGAAGAACTTTTCAATCCTAATGGTCAACATCTTGAGGAGGAATTAAACGTGGAACATATCAGACCATATCCTCCTGATGTTGAACATTATCTCAACGAGGGTGATAATGTGGATGTTTTTTCCCGACATGGCTGGTGGAG...

CDS

Download CDS FASTA

780 bp · TkA01G037220|TK1151|CDS

ATGTTTCAATACGAACCTGGTATGCGAGTTGAGGTAATAGGCCATGCTGATGTTTATGTGAACTCATATTATGCAGCAAATGTAGTACATTCTGATCAACAGAATGTAGTAGTCACTTATGAAGAACTTTTCAATCCTAATGGTCAACATCTTGAGGAGGAATTAAACGTGGAACATATCAGACCATATCCTCCTGATGTTGAACATTATCTCAACGAGGGTGATAATGTGGATGTTTTTTCCCGACATGGCTGGTGGAG...

Protein

Download Protein FASTA

259 aa · TkA01G037220|TK1151|PROTEIN

MFQYEPGMRVEVIGHADVYVNSYYAANVVHSDQQNVVVTYEELFNPNGQHLEEELNVEHIRPYPPDVEHYLNEGDNVDVFSRHGWWRGKARDDVRIHQEWVDVGHKSTWMHVKKSSLSPNHHNIQIAQDPHNQGVTVYTFQVGDRVEVIQHELDFENSFFAATLLRVYEDSLFVRYETLIDINDDPFLEEVNLQYIRPYPPNVRQPLTVRDDVEVWDYEGWWRGKRHGQRHKVYPRHDVRIHQEWMDCGVGGLWTHNKE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G037220`
TK1151 ID	TkA01G037220
OH-1004 ID	LXL04_004674
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.300
Protein coverage (%)	TK1151 90.347 / OH-1004 31.762 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G037220`
Location	Chr01:9628866-9630065 (+)
Description	Similar to RCE2: Probable NEDD8-conjugating enzyme Ubc12-like
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004674` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009733 response to auxin Biological Process GO:0036211 protein modification process Biological Process GO:0045116 protein neddylation Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0019787 ubiquitin-like protein transferase activity Molecular Function GO:0019788 NEDD8 transferase activity Molecular Function GO:0061654 NEDD8 conjugating enzyme activity Molecular Function
KEGG gene cross-reference	ath:AT2G18600 ath:AT4G36800 xla:446800 xtr:394553 yli:2910945 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580

Rank 1 · TkA01G037220 · TK1151

Cytoplasm0.558

Rank 2 · TkA01G037220 · TK1151

Mitochondrion0.035

Rank 3 · TkA01G037220 · TK1151

Endoplasmic reticulum0.032

Rank 4 · TkA01G037220 · TK1151

Cell membrane0.029

Rank 5 · TkA01G037220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09096Phage-tail_22-53 aa

PF05641Agenet7-65 aa

PF14604SH3_968-89 aa

PF07653SH3_271-89 aa

PF00018SH3_171-92 aa

PF05641Agenet74-89 aa

PF09096Phage-tail_2136-145 aa

PF14604SH3_9139-151 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G037220	`PF09096`	Phage-tail_2	2	53	0.13	12.8
TkA01G037220	`PF05641`	Agenet	7	65	3e-20	73.1
TkA01G037220	`PF14604`	SH3_9	68	89	6.7e-05	23.4
TkA01G037220	`PF07653`	SH3_2	71	89	0.14	12.5
TkA01G037220	`PF00018`	SH3_1	71	92	0.22	11.9
TkA01G037220	`PF05641`	Agenet	74	89	3e-20	73.1
TkA01G037220	`PF09096`	Phage-tail_2	136	145	0.13	12.8
TkA01G037220	`PF14604`	SH3_9	139	151	6.7e-05	23.4
TkA01G037220	`PF07653`	SH3_2	139	151	0.14	12.5
TkA01G037220	`PF00018`	SH3_1	139	152	0.22	11.9
TkA01G037220	`PF05641`	Agenet	143	201	3e-20	73.1
TkA01G037220	`PF07653`	SH3_2	210	230	0.14	12.5
TkA01G037220	`PF05641`	Agenet	212	225	3e-20	73.1
TkA01G037220	`PF14604`	SH3_9	217	236	6.7e-05	23.4
TkA01G037220	`PF00018`	SH3_1	218	229	0.22	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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