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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G032120
Reference: TK1151 Chr: Chr01 Coordinates: 8314331-8319778 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2079 bp · TkA01G032120|TK1151|cDNA

ATGACCCTTGGGGATGGCTCTTTGCACCACGAGAACAAAATCGGAAATACAGAGAAGCTGTTGACAAACAAGAGTTGGATCGAGAATAAGGCAATTGTTGAATCTTGGAGAAAAGCACTTCTTGAAGCAAGTAACATTTCTGGATGGGAAACCAAGCACATTACGAACGGGCATGAATCACAAGGTGGCCTTCCTTTAGCACTCACAGTTCTTGGTTGTTTCTTGTGTGACAAAAATATTAGTCAGTGTAGGAGTACATT...

CDS

Download CDS FASTA

2079 bp · TkA01G032120|TK1151|CDS

ATGACCCTTGGGGATGGCTCTTTGCACCACGAGAACAAAATCGGAAATACAGAGAAGCTGTTGACAAACAAGAGTTGGATCGAGAATAAGGCAATTGTTGAATCTTGGAGAAAAGCACTTCTTGAAGCAAGTAACATTTCTGGATGGGAAACCAAGCACATTACGAACGGGCATGAATCACAAGGTGGCCTTCCTTTAGCACTCACAGTTCTTGGTTGTTTCTTGTGTGACAAAAATATTAGTCAGTGTAGGAGTACATT...

Protein

Download Protein FASTA

692 aa · TkA01G032120|TK1151|PROTEIN

MTLGDGSLHHENKIGNTEKLLTNKSWIENKAIVESWRKALLEASNISGWETKHITNGHESQGGLPLALTVLGCFLCDKNISQCRSTLARLKEIPDKDILGKLRISFDGLEQVEEDLFLDIACLFRGKYTKNAMKLLDACGFHPVIGVEVLRQKALIVITKDGRFEMHDLVQEMGHYIMRGKHPQNPEKHSRVWKWKDVRRILATDIMTYLPNLTPMEFEGLCNLIKIPDFAGLPNLKTFKLGDCKSIEEFHPSIGRLEML...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G032120
TK1151 IDTkA01G032120
OH-1004 IDLXL04_005587
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.700
Protein coverage (%)TK1151 72.543 / OH-1004 27.670
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G032120
LocationChr01:8314331-8319778 (+)
DescriptionSimilar to ROQ1: Disease resistance protein Roq1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g19500 Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.467
Rank 1 · TkA01G032120 · TK1151
Cytoplasm0.343
Rank 2 · TkA01G032120 · TK1151
Cell membrane0.169
Rank 3 · TkA01G032120 · TK1151
Endoplasmic reticulum0.091
Rank 4 · TkA01G032120 · TK1151
Plastid0.057
Rank 5 · TkA01G032120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_8101-117 aa
PF23282WHD_ROQ1112-180 aa
PF23247LRR_RPS2212-249 aa
PF12799LRR_4223-249 aa
PF24758LRR_At5g56370226-308 aa
PF25019LRR_R13L1-DRL21228-268 aa
PF13855LRR_8230-267 aa
PF23598LRR_14231-323 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G032120PF13855LRR_81011170.009616.4
TkA01G032120PF23282WHD_ROQ11121807.5e-1968.4
TkA01G032120PF23247LRR_RPS22122490.004617.7
TkA01G032120PF12799LRR_42232498.4e-0523.4
TkA01G032120PF24758LRR_At5g563702263080.01515.7
TkA01G032120PF25019LRR_R13L1-DRL212282680.008616.7
TkA01G032120PF13855LRR_82302670.009616.4
TkA01G032120PF23598LRR_142313236.7e-0522.5
TkA01G032120PF23286LRR_132322490.0006220.2
TkA01G032120PF13516LRR_62342470.0003321.2
TkA01G032120PF00560LRR_12352570.113.5
TkA01G032120PF25019LRR_R13L1-DRL212563130.008616.7
TkA01G032120PF23247LRR_RPS22573060.004617.7
TkA01G032120PF00560LRR_12602700.113.5
TkA01G032120PF12799LRR_42662868.4e-0523.4
TkA01G032120PF13855LRR_82752950.009616.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JT78Arabidopsis thalianasp|F4JT78|RPP2A_ARATH Disease resistance protein RPP2A26.600%Swiss-ProtLow

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