Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1226 bp · TkA01G031320|TK1151|cDNA
TATCAGTGTAGCATAGCTATTACTTGAGAGACAATTTCGTAATCACCACCTCATTGGGCAGCTTTCTCTACCATGGCTTCCATGTACTCACCAAGTCACCGCCACCAAAACCCTAACAAACCGCCGCCGGCTCTCCTAAGGTAACAAACCACCGCCGGCTTCTACTGGGCACAGGAACAAGCGTAATACTTTCGTGTGGACATCTTATTACTCTACTATGGACCCGACATCCACACAGAACCACGAAAACCCTAGCACTT...
744 bp · TkA01G031320|TK1151|CDS
ATGGACCCGACATCCACACAGAACCACGAAAACCCTAGCACTTCCGATGTCGGCCTCAAACCTGCGCCAGAGGACCAGTACCTCGCGTATTCTACTTACCTATCTCGTCAACAAATTCTCCGGCGACGATCCTACAACCTGAAGCAACTGACGAAATGCTACCGCGACCAATATTGGGCACTTATGGAGGAACTTAGAGTTAAACGCAGGGAATATGTGTGGAAATTCGGTAAGAATCCGTTTCACGAAGATCCCAATGA...
Protein
Download Protein FASTA247 aa · TkA01G031320|TK1151|PROTEIN
MDPTSTQNHENPSTSDVGLKPAPEDQYLAYSTYLSRQQILRRRSYNLKQLTKCYRDQYWALMEELRVKRREYVWKFGKNPFHEDPNEDDKDNVIEEQVKDGIENGIAEASDGNGKSNGLICTSSGCTMKAMILTNFCRFHILSDPKQQLYKPCEYVPKRGQDGNVICGRPALRSMVPSLCSCHFQLAQENVIRALRKAGLDITSPNKIAPKLHVVVAEYVREIQGRRRIIASRVNRKKVVPKVEIDN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G031320 |
|---|---|
| TK1151 ID | TkA01G031320 |
| OH-1004 ID | LXL04_004181 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.900 |
| Protein coverage (%) | TK1151 96.356 / OH-1004 86.232Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G031320 |
|---|---|
| Location | Chr01:8079659-8081247 (-) |
| Description | Similar to DDB_G0288447: INO80 complex subunit D |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0005634 nucleus Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0288447 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03959FSH168-141 aaPF13891zf-C3HC3H_KANSL2121-184 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G031320 | PF03959 | FSH1 | 68 | 141 | 0.1 | 13.0 |
| TkA01G031320 | PF13891 | zf-C3HC3H_KANSL2 | 121 | 184 | 1.6e-14 | 54.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.