TkA01G030800 | RubberDandelionOmics

Gene overview

TkA01G030800

Reference: TK1151 Chr: Chr01 Coordinates: 7919830-7920404 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

372 bp · TkA01G030800|TK1151|cDNA

GAGGTATAAAAGGAAACGAATGGCTGACCTAATTTGCCAAGAACACCGACGACTATGGCATCGTCTTCCTCGTCTTCATCTGGTCTCTATCGAGCTACACATCTGGATTACCAAAATAGATGCAATTGTGGACTTCCATCACGTGTTCTAACCTCAGGAACCACAGAGAACCCAGATAGGCGATTTTTGGTGTGCAGTAAGTCGCAGTTTTGGATATGGCAGGATGAGGCAACAAATGAAGTGGAGGAAATTAAGGTAGT...

CDS

Download CDS FASTA

318 bp · TkA01G030800|TK1151|CDS

ATGGCATCGTCTTCCTCGTCTTCATCTGGTCTCTATCGAGCTACACATCTGGATTACCAAAATAGATGCAATTGTGGACTTCCATCACGTGTTCTAACCTCAGGAACCACAGAGAACCCAGATAGGCGATTTTTGGTGTGCAGTAAGTCGCAGTTTTGGATATGGCAGGATGAGGCAACAAATGAAGTGGAGGAAATTAAGGTAGTTGTTGAGGAATTGAAACAAAAATTGCATTTTGAATCTTTGGCAGTGAGGAAAGA...

Protein

Download Protein FASTA

106 aa · TkA01G030800|TK1151|PROTEIN

MASSSSSSSGLYRATHLDYQNRCNCGLPSRVLTSGTTENPDRRFLVCSKSQFWIWQDEATNEVEEIKVVVEELKQKLHFESLAVRKEMEELKTGLEKVKTEMLHLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G030800`
TK1151 ID	TkA01G030800
OH-1004 ID	LXL04_025772
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.500
Protein coverage (%)	TK1151 100.000 / OH-1004 84.615 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G030800`
Location	Chr01:7919830-7920404 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025772` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.729

Rank 1 · TkA01G030800 · TK1151

Cytoplasm0.239

Rank 2 · TkA01G030800 · TK1151

Mitochondrion0.066

Rank 3 · TkA01G030800 · TK1151

Cell membrane0.030

Rank 4 · TkA01G030800 · TK1151

Endoplasmic reticulum0.024

Rank 5 · TkA01G030800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30834DUF874820-52 aa

PF06839Zn_ribbon_GRF23-58 aa

PF01074Glyco_hydro_38N36-72 aa

PF04822Takusan52-72 aa

PF24531ANC1_spectrin57-105 aa

PF05377FlaC_arch60-76 aa

PF04822Takusan78-103 aa

PF05377FlaC_arch83-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G030800	`PF30834`	DUF8748	20	52	0.035	15.2
TkA01G030800	`PF06839`	Zn_ribbon_GRF	23	58	6.7e-05	23.6
TkA01G030800	`PF01074`	Glyco_hydro_38N	36	72	0.076	13.1
TkA01G030800	`PF04822`	Takusan	52	72	1.2	9.8
TkA01G030800	`PF24531`	ANC1_spectrin	57	105	0.028	15.5
TkA01G030800	`PF05377`	FlaC_arch	60	76	2.2	9.5
TkA01G030800	`PF04822`	Takusan	78	103	1.2	9.8
TkA01G030800	`PF05377`	FlaC_arch	83	101	2.2	9.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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