Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1540 bp · TkA01G028840|TK1151|cDNA
TTTCAAAGGTAGAAGTAAAAGTTTAATAAAATTTCAGAATCGTGTGCCTCAAACTTGCTTTTCGAAATTCGAGTCTATAGCTTCAATCAATTGATGGGTCTGATCTAAATTGAGAATTCGATTTTGACATCAACGATCTGAATCCTTATCGACCCATTTTTCTGGAAACCGATTCTCCAACTACTAGAGCAGCTCTGTTCCAAAACCCTCAAATTACAGTTGAAGAAATCGCCAATGAAGAATCAGTGTTTAGCATAAAT...
1008 bp · TkA01G028840|TK1151|CDS
ATGTTTTGGAGGGAACGTGAAAGGGAGATCAGCAAAGAGCAAAATGGAATCCCTCCTTGTGGGCAGGTTCGAGTTCTTGTGGTTGGGGATTCAGGTGTGGGGAAAACTTCTCTTGTTCATTTGATAGTGAAAGGTACAACAACAAAACATCCGCCTCAAACAGTTGGGTGTACAGTAGATGTGAAGCATTTTACATATGGAAGTGCTAGCAGCTCTTCAGATAGTGAAAAAGGAGACAAAGATAGGGAATTCTTCATTGA...
Protein
Download Protein FASTA335 aa · TkA01G028840|TK1151|PROTEIN
MFWREREREISKEQNGIPPCGQVRVLVVGDSGVGKTSLVHLIVKGTTTKHPPQTVGCTVDVKHFTYGSASSSSDSEKGDKDREFFIELWDVSGHDRYTDCRSIFYSQINGVIFVHDLSQRRTKTSLKKWAAEIAATGTFSAPLANGGPGGLPVPYLVIGNKADVAAKEGTRGSSGNLVDMARQWVEKQGLLTSTEELPLIDTFPGTGGLMAAAKEARYDKEAVLKFFRMLVRRRYFSDELPMSSPWSTSIPRPLQRPSDN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G028840 |
|---|---|
| TK1151 ID | TkA01G028840 |
| OH-1004 ID | LXL04_020019 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 73.200 |
| Protein coverage (%) | TK1151 36.716 / OH-1004 27.746Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G028840 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:7395713-7398625 (-) | |||||||||
| Description | Similar to LIP1: Small GTPase LIP1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0009640 photomorphogenesis Biological Process GO:0032922 circadian regulation of gene expression Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0012505 endomembrane system Cellular Component GO:0003924 GTPase activity Molecular Function GO:0005525 GTP binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G09910 ath:AT5G64813 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00493MCM15-44 aaPF00025Arf22-133 aaPF00158Sigma54_activat22-51 aaPF09439SRPRB23-116 aaPF12775AAA_723-48 aaPF00735Septin23-50 aaPF08477Roc24-137 aaPF00071Ras24-171 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G028840 | PF00493 | MCM | 15 | 44 | 0.21 | 11.4 |
| TkA01G028840 | PF00025 | Arf | 22 | 133 | 9.7e-07 | 29.1 |
| TkA01G028840 | PF00158 | Sigma54_activat | 22 | 51 | 0.2 | 12.0 |
| TkA01G028840 | PF09439 | SRPRB | 23 | 116 | 0.0046 | 17.1 |
| TkA01G028840 | PF12775 | AAA_7 | 23 | 48 | 0.11 | 12.7 |
| TkA01G028840 | PF00735 | Septin | 23 | 50 | 0.26 | 11.2 |
| TkA01G028840 | PF08477 | Roc | 24 | 137 | 1.5e-18 | 67.9 |
| TkA01G028840 | PF00071 | Ras | 24 | 171 | 1e-16 | 61.6 |
| TkA01G028840 | PF04670 | Gtr1_RagA | 24 | 135 | 0.00029 | 21.0 |
| TkA01G028840 | PF01926 | MMR_HSR1 | 24 | 127 | 0.0024 | 18.7 |
| TkA01G028840 | PF00009 | GTP_EFTU | 24 | 123 | 0.0045 | 17.3 |
| TkA01G028840 | PF20703 | nSTAND1 | 24 | 40 | 0.12 | 12.7 |
| TkA01G028840 | PF00005 | ABC_tran | 24 | 47 | 0.14 | 13.5 |
| TkA01G028840 | PF13555 | AAA_29 | 24 | 39 | 0.29 | 11.7 |
| TkA01G028840 | PF01580 | FtsK_SpoIIIE | 24 | 55 | 0.33 | 11.1 |
| TkA01G028840 | PF13191 | AAA_16 | 25 | 44 | 0.0026 | 19.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.