TkA01G024420 | RubberDandelionOmics

Gene overview

TkA01G024420

Reference: TK1151 Chr: Chr01 Coordinates: 6292270-6293681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

522 bp · TkA01G024420|TK1151|cDNA

ATGTTTCTGATAACCATTAAATGTGTTTATACCTTCAAAATAAGGAAAGAAATTGTTGAAAAGTTGTTGAATAACAGGAATATAGGTTTGCCTGTTTATTTGGAAAAAGAAGATCTGTTGATCTGGGTTTTAGACTTTATAGTCCTAATAAGAGGGCATGATTTCAGCAAAAGTGTATTCAATGATCGGATTGTTATAGTTTGTGATCAGTGTGAAAGAGAGTATCATATCGGGTGTCTAATGGAATACAAAATGGTTGA...

CDS

Download CDS FASTA

522 bp · TkA01G024420|TK1151|CDS

ATGTTTCTGATAACCATTAAATGTGTTTATACCTTCAAAATAAGGAAAGAAATTGTTGAAAAGTTGTTGAATAACAGGAATATAGGTTTGCCTGTTTATTTGGAAAAAGAAGATCTGTTGATCTGGGTTTTAGACTTTATAGTCCTAATAAGAGGGCATGATTTCAGCAAAAGTGTATTCAATGATCGGATTGTTATAGTTTGTGATCAGTGTGAAAGAGAGTATCATATCGGGTGTCTAATGGAATACAAAATGGTTGA...

Protein

Download Protein FASTA

173 aa · TkA01G024420|TK1151|PROTEIN

MFLITIKCVYTFKIRKEIVEKLLNNRNIGLPVYLEKEDLLIWVLDFIVLIRGHDFSKSVFNDRIVIVCDQCEREYHIGCLMEYKMVDLEALPKGRWFCKVDCERIHSVLQDLLIRVPKIVHEELLTFVRKKEKEKKKNKENEKEYKNEKESEVEKKKENEKEKEQENENEDGA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G024420`
TK1151 ID	TkA01G024420
OH-1004 ID	LXL04_009896
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.500
Protein coverage (%)	TK1151 63.006 / OH-1004 43.083 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G024420`
Location	Chr01:6292270-6293681 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009896` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.637

Rank 1 · TkA01G024420 · TK1151

Cytoplasm0.325

Rank 2 · TkA01G024420 · TK1151

Cell membrane0.046

Rank 3 · TkA01G024420 · TK1151

Mitochondrion0.044

Rank 4 · TkA01G024420 · TK1151

Endoplasmic reticulum0.027

Rank 5 · TkA01G024420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22191IBR_17-13 aa

PF20955Caud_bapl16_4th14-67 aa

PF23412zf_RING_Vps861-98 aa

PF00628PHD62-99 aa

PF22191IBR_167-85 aa

PF26777NCAPD3_N106-169 aa

PF00029Connexin108-164 aa

PF24871Piezo_TM1-24111-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G024420	`PF22191`	IBR_1	7	13	0.43	11.2
TkA01G024420	`PF20955`	Caud_bapl16_4th	14	67	0.088	13.7
TkA01G024420	`PF23412`	zf_RING_Vps8	61	98	0.086	13.4
TkA01G024420	`PF00628`	PHD	62	99	1.4e-05	25.7
TkA01G024420	`PF22191`	IBR_1	67	85	0.43	11.2
TkA01G024420	`PF26777`	NCAPD3_N	106	169	3.3	8.1
TkA01G024420	`PF00029`	Connexin	108	164	0.016	15.7
TkA01G024420	`PF24871`	Piezo_TM1-24	111	165	1.4	8.0
TkA01G024420	`PF04088`	Peroxin-13_N	113	165	1.9	9.4
TkA01G024420	`PF17110`	TFB6	114	169	1.1	9.7
TkA01G024420	`PF24181`	TPR_TTI1_C	121	168	1.2	9.4
TkA01G024420	`PF18004`	RPN2_C	126	170	2.5	8.7
TkA01G024420	`PF22770`	POP1_C	130	166	2.7	8.9
TkA01G024420	`PF05887`	Trypan_PARP	132	172	5.7	7.6
TkA01G024420	`PF01080`	Presenilin	133	166	4.7	6.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card