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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G023550
Reference: TK1151 Chr: Chr01 Coordinates: 6050184-6053938 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3084 bp · TkA01G023550|TK1151|cDNA

ATGTTGAAGTTCATATTCAAAGAATGCTGTTTTGATAATGTTTATACGTTGATAACCACAATTGTCCAATACGTTGACATACCGCATAGGGCTGTTCCGGGGGAAACAAAAGCCAAACGATCTACTCTTACGATGCGGCAATTTTTTGCATATAGATTCCAAGACAGAAACGAAGGTTATTCACTAATTCTCAATGCAAGAAGGCTTTATCAACAAATATTGGTTGATGCTTATACCATGATTGAAATGACATGTAATCC...

CDS

Download CDS FASTA

3084 bp · TkA01G023550|TK1151|CDS

ATGTTGAAGTTCATATTCAAAGAATGCTGTTTTGATAATGTTTATACGTTGATAACCACAATTGTCCAATACGTTGACATACCGCATAGGGCTGTTCCGGGGGAAACAAAAGCCAAACGATCTACTCTTACGATGCGGCAATTTTTTGCATATAGATTCCAAGACAGAAACGAAGGTTATTCACTAATTCTCAATGCAAGAAGGCTTTATCAACAAATATTGGTTGATGCTTATACCATGATTGAAATGACATGTAATCC...

Protein

Download Protein FASTA

1027 aa · TkA01G023550|TK1151|PROTEIN

MLKFIFKECCFDNVYTLITTIVQYVDIPHRAVPGETKAKRSTLTMRQFFAYRFQDRNEGYSLILNARRLYQQILVDAYTMIEMTCNPKWPEVQRFLRDKSLKSEDRPDILTRLFKIKLDAVVKDLKDKAILGVVQAFVYTVEFQKRGLPHAHICLFMHPDCKLRTVEYIDPIISAEIPDKDEDPELYDLVSEFMMHDPCGIDNPRCQCMVDNKCSKNYPMKFKDHTGVDSNGYPLYRRRDNGSYVDKGNVRLDNRSVVPY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G023550
TK1151 IDTkA01G023550
OH-1004 IDLXL04_005692
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)87.400
Protein coverage (%)TK1151 99.805 / OH-1004 75.065
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G023550
LocationChr01:6050184-6053938 (+)
DescriptionSimilar to pif1: ATP-dependent DNA helicase pif1 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005692 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0051276 chromosome organization Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0031981 nuclear lumen Cellular Component
KEGG gene cross-reference
bba:Bd3546
cje:Cj0945c
rno:367645
tbr:Tb11.01.6420
xla:734585
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869
Rank 1 · TkA01G023550 · TK1151
Cytoplasm0.169
Rank 2 · TkA01G023550 · TK1151
Mitochondrion0.046
Rank 3 · TkA01G023550 · TK1151
Cell membrane0.014
Rank 4 · TkA01G023550 · TK1151
Extracellular0.012
Rank 5 · TkA01G023550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14214Helitron_like_N48-82 aa
PF14214Helitron_like_N83-153 aa
PF23343REP_ORF2-G2P118-165 aa
PF20199RepSA136-154 aa
PF23343REP_ORF2-G2P271-293 aa
PF20199RepSA277-321 aa
PF05970PIF1568-652 aa
PF13191AAA_16578-617 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G023550PF14214Helitron_like_N48821.9e-2590.9
TkA01G023550PF14214Helitron_like_N831531.9e-2590.9
TkA01G023550PF23343REP_ORF2-G2P1181658.9e-0626.6
TkA01G023550PF20199RepSA1361540.02614.4
TkA01G023550PF23343REP_ORF2-G2P2712938.9e-0626.6
TkA01G023550PF20199RepSA2773210.02614.4
TkA01G023550PF05970PIF15686524.9e-74249.4
TkA01G023550PF13191AAA_165786170.02315.9
TkA01G023550PF10923BrxC_BrxD5806240.1312.0
TkA01G023550PF13604AAA_305866350.001718.8
TkA01G023550PF13481AAA_255876330.1312.5
TkA01G023550PF05970PIF16557644.9e-74249.4
TkA01G023550PF21530Pif1_2B_dom8669102.1e-1763.3
TkA01G023550PF02689Herpes_Helicase95710010.000121.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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