Gene Card
Gene overview
cDNA / CDS / Protein Sequences
354 bp · TkA01G023340|TK1151|cDNA
ATGCAGAACCCACAACCACAGGGCAACATGGAGGCTAGAGGCTGGAGCCGAGAGGACGTTCGGTTTGTGAAGGATTTGAATTCATTACCTGCGGTTTCGTATCCTAAGAGGGTGGCGCCATTGCCGGAAGATAAAATGCAGGATGCTGATGGTGAAGTGGAGAGGACGAATGAGGAAATGGAGGCAGAGAGGATGAAGAATGTGGTTAGGGTTGAGATAGAGAGAGAGAGATGTTTAAAGCTGCCATATATATATATATA...
354 bp · TkA01G023340|TK1151|CDS
ATGCAGAACCCACAACCACAGGGCAACATGGAGGCTAGAGGCTGGAGCCGAGAGGACGTTCGGTTTGTGAAGGATTTGAATTCATTACCTGCGGTTTCGTATCCTAAGAGGGTGGCGCCATTGCCGGAAGATAAAATGCAGGATGCTGATGGTGAAGTGGAGAGGACGAATGAGGAAATGGAGGCAGAGAGGATGAAGAATGTGGTTAGGGTTGAGATAGAGAGAGAGAGATGTTTAAAGCTGCCATATATATATATATA...
Protein
Download Protein FASTA117 aa · TkA01G023340|TK1151|PROTEIN
MQNPQPQGNMEARGWSREDVRFVKDLNSLPAVSYPKRVAPLPEDKMQDADGEVERTNEEMEAERMKNVVRVEIERERCLKLPYIYIYIYIYIYIYIYIYIYIYIYIYMCVFVCVCLR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G023340 |
|---|---|
| TK1151 ID | TkA01G023340 |
| OH-1004 ID | LXL04_031103 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 95.500 |
| Protein coverage (%) | TK1151 56.410 / OH-1004 15.493Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G023340 |
|---|---|
| Location | Chr01:5995799-5996152 (-) |
| Description | Similar to rplA: 50S ribosomal protein L1 (Jannaschia sp. (strain CCS1) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0006417 regulation of translation Biological Process GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0003735 structural constituent of ribosome Molecular Function GO:0019843 rRNA binding Molecular Function |
| KEGG gene cross-reference | bja:bll5414 dsh:Dshi_0261 jan:Jann_0564 mes:Meso_1822 rde:RD1_4022 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03839Sec6252-111 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G023340 | PF03839 | Sec62 | 52 | 111 | 0.013 | 16.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.