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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G019040
Reference: TK1151 Chr: Chr01 Coordinates: 4856461-4859783 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1062 bp · TkA01G019040|TK1151|cDNA

ATGGACAAAAAACCTATTCTCCTACTAATAATCTTCGCCTTTTTTCTACTAAACCACATCGCCGGTGCTAACCATGACTGCTTGCCGGCCTCCTGTGGCCCCTACGAACCACAAGTACGGTTTCCGTTCCGTATCCTTGACCGACAGCCAGTCCGGTGCGGTTTCCCCGGTTTTGACCTCGCTTGTAACGAACAAAACCAAACAATCATCCAACTCCCGTCATCCGTTTCATACAAGATCAACAAAATTTCCTATCCCGA...

CDS

Download CDS FASTA

1062 bp · TkA01G019040|TK1151|CDS

ATGGACAAAAAACCTATTCTCCTACTAATAATCTTCGCCTTTTTTCTACTAAACCACATCGCCGGTGCTAACCATGACTGCTTGCCGGCCTCCTGTGGCCCCTACGAACCACAAGTACGGTTTCCGTTCCGTATCCTTGACCGACAGCCAGTCCGGTGCGGTTTCCCCGGTTTTGACCTCGCTTGTAACGAACAAAACCAAACAATCATCCAACTCCCGTCATCCGTTTCATACAAGATCAACAAAATTTCCTATCCCGA...

Protein

Download Protein FASTA

353 aa · TkA01G019040|TK1151|PROTEIN

MDKKPILLLIIFAFFLLNHIAGANHDCLPASCGPYEPQVRFPFRILDRQPVRCGFPGFDLACNEQNQTIIQLPSSVSYKINKISYPDQLIYIDPEFCRPNRLVSVNNYSSRYPEVLFPCLNNGNYSVVAISTDYYYPGYVPTNCTVMKTILVPIRPSGYILDALELMWFTPYCKGCERKGDVCEWNHDDRQISCVSSSHFSFTDISRNAKLALSIGIGVPALICIIGLAYFAFHKVQGHNDTHNQSIALSTITNMPQPTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G019040
TK1151 IDTkA01G019040
OH-1004 IDLXL04_005754
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)57.600
Protein coverage (%)TK1151 98.017 / OH-1004 75.362
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G019040
LocationChr01:4856461-4859783 (-)
DescriptionSimilar to ATL21A: Putative RING-H2 finger protein ATL21A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25410 RING-H2 finger protein ATL22. No verified direct reference in this release
At2g46495 Putative RING-H2 finger protein ATL21A. No verified direct reference in this release
At2g46494 Putative RING-H2 finger protein ATL21B. No verified direct reference in this release
At2g46493 Putative RING-H2 finger protein ATL21C. No verified direct reference in this release
At1g28040 RING-H2 finger protein ATL20. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005576 extracellular region Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0030247 polysaccharide binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G25410
ath:AT2G46494
ath:AT2G46495
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.711
Rank 1 · TkA01G019040 · TK1151
Endoplasmic reticulum0.121
Rank 2 · TkA01G019040 · TK1151
Cytoplasm0.109
Rank 3 · TkA01G019040 · TK1151
Nucleus0.083
Rank 4 · TkA01G019040 · TK1151
Lysosome / Vacuole0.073
Rank 5 · TkA01G019040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind27-92 aa
PF13947GUB_WAK_bind121-133 aa
PF12861zf-ANAPC11169-184 aa
PF25143Zn_ribbon_IFT122_C171-176 aa
PF13920zf-C3HC4_3172-179 aa
PF13901RH_dom172-192 aa
PF17120zf-RING_16181-199 aa
PF13947GUB_WAK_bind183-198 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G019040PF13947GUB_WAK_bind27922.6e-1660.5
TkA01G019040PF13947GUB_WAK_bind1211332.6e-1660.5
TkA01G019040PF12861zf-ANAPC111691845.4e-0523.9
TkA01G019040PF25143Zn_ribbon_IFT122_C1711762.98.6
TkA01G019040PF13920zf-C3HC4_31721790.008616.6
TkA01G019040PF13901RH_dom1721922.18.9
TkA01G019040PF17120zf-RING_161811992.68.4
TkA01G019040PF13947GUB_WAK_bind1831982.6e-1660.5
TkA01G019040PF12861zf-ANAPC112873335.4e-0523.9
TkA01G019040PF13920zf-C3HC4_32873340.008616.6
TkA01G019040PF13639zf-RING_22893321.7e-1351.3
TkA01G019040PF12678zf-rbx12893321.7e-0732.1
TkA01G019040PF17120zf-RING_162893302.68.4
TkA01G019040PF00097zf-C3HC42903317.1e-0936.1
TkA01G019040PF17123zf-RING_112903184.2e-0833.5
TkA01G019040PF13923zf-C3HC4_22903313.5e-0730.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKK8Arabidopsis thalianasp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL2233.800%Swiss-ProtMedium
P0CH01Arabidopsis thalianasp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A33.500%Swiss-ProtMedium
P0CH02Arabidopsis thalianasp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B32.900%Swiss-ProtMedium
P0CH03Arabidopsis thalianasp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C30.200%Swiss-ProtMedium
Q9C7E9Arabidopsis thalianasp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL2031.800%Swiss-ProtMedium

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